f@preamble{ " \newcommand{\noop}[1]{} " } %%%%%%%%%%%%%%%%% A %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Aa %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ab %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ac %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ad %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ae %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Af %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ag %%%%%%%%%%%%%%%%%%%%%%%%% @misc{agard2003visage, title={Visage des Alpes: Structure et {\'e}volution g{\'e}odynamique}, author={Agard, Philippe and Lemoine, Marcel}, year={2003}, publisher={Commission de la Carte G{\'e}ologique du Monde} } %%%%%%%%%%%%%%%%% Ah %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ai %%%%%%%%%%%%%%%%%%%%%%%%% @article{airy1855iii, title={III. On the computation of the effect of the attraction of mountain-masses, as disturbing the apparent astronomical latitude of stations in geodetic surveys}, author={Airy, George Biddell}, journal={Philosophical Transactions of the Royal Society of London}, number={145}, pages={101--104}, year={1855}, publisher={The Royal Society London} } %%%%%%%%%%%%%%%%% Aj %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ak %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Al %%%%%%%%%%%%%%%%%%%%%%%%% @book{albarede2009geochemistry, title={Geochemistry: an introduction}, author={Albar{\`e}de, Francis}, year={2009}, publisher={Cambridge University Press} } @article{allegre2005geologie, title={G{\'e}ologie isotopique}, author={All{\`e}gre, Claude}, year={2005}, publisher={Belin} } @book{allegre2008isotope, title={Isotope geology}, author={All{\`e}gre, Claude J}, year={2008}, publisher={Cambridge University Press} } %%%%%%%%%%%%%%%%% Am %%%%%%%%%%%%%%%%%%%%%%%%% @misc{AMSD2019, url = {http://rruff.geo.arizona.edu/AMS/amcsd.php}, title = {American Mineralogist Structure Database}, author = {{Mineralogical Society of America } and {Mineralogical Association of Canada}}, year = {\the \year} } %%%%%%%%%%%%%%%%% An %%%%%%%%%%%%%%%%%%%%%%%%% @article{anderson1994new, title={New Zealand seismicity: patterns revealed by the upgraded National Seismograph Network}, author={Anderson, Helen and Webb, Terry}, journal={New Zealand journal of geology and geophysics}, volume={37}, number={4}, pages={477--493}, year={1994}, publisher={Taylor \& Francis} } @article{Andreini2004, author = {Andreini, Claudia and Banci, Lucia and Bertini, Ivano and Luchinat, Claudio and Rosato, Antonio}, file = {:home/jl/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Andreini et al. - 2004 - Bioinformatic Comparison of Structures and Homology-Models of Matrix Metalloproteinases.pdf:pdf}, journal = {Journal of proteome research}, keywords = {cancer,collagen,hemopexin,matrix metalloproteinase,mmp}, mendeley-groups = {Th\`{e}se,Th\`{e}se/Cu transport in cell,Th\`{e}se/Cu transport in cell/Evolution of Cu transporter}, pages = {21--31}, title = {{Bioinformatic Comparison of Structures and Homology-Models of Matrix Metalloproteinases}}, volume = {3}, year = {2004}, doi = {10.1021/pr0340476} } @article{Andreini2008, author = {Andreini, Claudia and Banci, Lucia and Bertini, Ivano and Rosato, Antonio}, file = {:home/jl/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Andreini et al. - 2008 - Occurrence of Copper Proteins through the Three Domains of Life A Bioinformatic Approach.pdf:pdf}, journal = {Journal of proteome research}, keywords = {copper,electron transfer,evolution,homeostasis,metalloprotein,metalloproteome}, pages = {209--216}, title = {{Occurrence of copper proteins through the three domains of life: a bioinformatic approach}}, volume = {7}, year = {2008}, doi = {10.1021/pr070480u} } @article{Andrews1990, title={Cellular pharmacology of cisplatin: perspectives on mechanisms of acquired resistance.}, author={Andrews, PA and Howell, SB}, journal={Cancer cells}, volume={2}, number={2}, pages={35--43}, year={1990}, doi = {10.1007/978-1-4615-2632-2_11} } %%%%%%%%%%%%%%%%% Ao %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ap %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Aq %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ar %%%%%%%%%%%%%%%%%%%%%%%%% @article{Aramendia2013, author = {Aramend\'{\i}a, Maite and Rello, Luis and Resano, Mart\'{\i}n and Vanhaecke, Frank}, doi = {10.1039/c3ja30349g}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Isotopes in biology/metal isotopes in medicine/aramenda2013.pdf:pdf}, journal = {Journal of Analytical Atomic Spectrometry}, mendeley-groups = {Th\`{e}se/Isotopes in biology/MC ICP + biology}, pages = {675--681}, title = {{Isotopic analysis of Cu in serum samples for diagnosis of Wilson's disease: a pilot study}}, volume = {28}, year = {2013} } @article{Arguello2012, author = {Arg\"{u}ello, Jos\'{e} M. and Raimunda, Daniel and Gonz\'{a}lez-Guerrero, Manuel}, doi = {10.1074/jbc.R111.319343}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Metal-transport/Argello\_etal\_Transmembrane-Metal-transport\_2012.pdf:pdf}, journal = {The Journal of biological chemistry}, mendeley-groups = {Th\`{e}se/Metal transport}, number = {17}, pages = {13510--13517}, title = {{Metal Transport across Biomembranes: Emerging Models for a Distinct Chemistry}}, volume = {287}, year = {2012} } @article{artus2010effets, title={Les effets d’un prix du p{\'e}trole {\'e}lev{\'e} et volatil}, author={Artus, Patrick and d’Autume, Antoine and Chalmin, Philippe and Chevalier, Jean-Marie and others}, journal={CAE Rapport}, year={2010} } @article{Arnon1939, title={The essentiality of certain elements in minute quantity for plants with special reference to copper}, author={Arnon, DI and Stout, PR}, journal={Plant physiology}, volume={14}, number={2}, pages={371-375}, year={1939}, publisher={American Society of Plant Biologists}, doi = {10.1104/pp.14.2.371} } @article{Arredondo2003, abstract = {Despite important advances in the understanding of copper secretion and excretion, the molecular components of intestinal copper absorption remain a mystery. DMT1, also known as Nramp2 and DCT1, is the transporter responsible for intestinal iron uptake. Electrophysiological evidence suggests that DMT1 can also be a copper transporter. Thus we examined the potential role of DMT1 as a copper transporter in intestinal Caco-2 cells. Treatment of cells with a DMT1 antisense oligonucleotide resulted in 80 and 48\% inhibition of iron and copper uptake, respectively. Cells incorporated considerable amounts of copper as Cu(1+), whereas Cu(2+) transport was about 10-fold lower. Cu(1+) inhibited apical Fe(2+) transport. Fe(2+), but not Fe(3+), effectively inhibited Cu(1+) uptake. The iron content of the cells influenced both copper and iron uptake. Cells with low iron content transported fourfold more iron and threefold more copper than cells with high iron content. These results demonstrate that DMT1 is a physiologically relevant Cu(1+) transporter in intestinal cells, indicating that intestinal absorption of copper and iron are intertwined.}, author = {Arredondo, Miguel and Mu\~{n}oz, Patricia and Mura, Casilda V and N\`{u}\~{n}ez, Marco T}, doi = {10.1152/ajpcell.00480.2002}, journal = {American journal of physiology}, mendeley-groups = {Th\`{e}se/Cu transport in cell/Human/Low affinity}, number = {6}, pages = {1525--1530}, title = {{DMT1, a physiologically relevant apical Cu\textsuperscript{+} transporter of intestinal cells.}}, volume = {284}, year = {2003} } %%%%%%%%%%%%%%%%% As %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% At %%%%%%%%%%%%%%%%%%%%%%%%% @article{Atema1993, author = {Atema, Anita and Buurman, Karin J.H and Noteboom, Erik and Smets, Lou A}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Cancer/Cancer resistance to Pt/History/atema1993.pdf:pdf}, journal = {International Journal of Cancer}, mendeley-groups = {Th\`{e}se/Cancer/Resistance to Pt/History}, pages = {166--172}, title = {{Potentation of DNA-adduct formation and cytotoxicity of platinum-containing drugs by low pH}}, volume = {54}, doi = {10.1002/ijc.2910540126}, year = {1993} } @article{Atwood1998, author = {Atwood, Craig S and Moir, Robert D and Huang, Xudong and Scarpa, Richard C and Bacarra, Michael E and Romano, Donna M and Hartshorn, Mariana A and Tanzi, Rudolph E and Bush, Ashley I}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Diseases/Alzheimer/Atwood1998.pdf:pdf}, journal = {The Journal of biological chemistry}, mendeley-groups = {Th\`{e}se/Diseases/Alzheimer}, number = {21}, pages = {12817--12826}, title = {{Dramatic Aggregation of Alzheimer A$\beta$ by Cu(II) Is Induced by Conditions Representing Physiological Acidosis}}, volume = {273}, doi = {10.1074/jbc.273.21.12817}, year = {1998} } %%%%%%%%%%%%%%%%% Au %%%%%%%%%%%%%%%%%%%%%%%%% @article{auchmann2012extreme, title={Extreme climate, not extreme weather: the summer of 1816 in Geneva, Switzerland}, author={Auchmann, Renate and Br{\"o}nnimann, Stefan and Breda, L and B{\"u}hler, M and Spadin, R and Stickler, Alexander Nicolas}, journal={Climate of the Past}, volume={8}, number={1}, pages={325--335}, year={2012}, publisher={Copernicus Publications} } @techreport{augris2001fonds, title = {Cartographie géologique des fonds marins côtiers}, author = {Augris, Claude and Clabaut, Philippe}, institution = {IFREMER}, year = {2001}, } @article{augustsson1977radiative, title={A radiative-convective model study of the CO2 climate problem}, author={Augustsson, T and Ramanathan, V}, journal={Journal of the Atmospheric Sciences}, volume={34}, number={3}, pages={448--451}, year={1977} } @phdthesis{Augier2011, title={Etude de l'{\'e}ruption d'avril 2007 du Piton de la Fournaise ({\^\i}le de la R{\'e}union) {\`a} partir de donn{\'e}es d'interf{\'e}rom{\'e}trie RADAR et GPS, d{\'e}veloppement et application de proc{\'e}dures de mod{\'e}lisation}, author={Augier, Aur{\'e}lien}, year={2011}, school={Universit{\'e} Blaise Pascal-Clermont-Ferrand II} } %%%%%%%%%%%%%%%%% Av %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Aw %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ax %%%%%%%%%%%%%%%%%%%%%%%%% @article{Axelsen1998, title={{Evolution of substrate specificities in the P-type ATPase superfamily}}, author={Axelsen, Kristian B and Palmgren, Michael G}, journal={Journal of molecular evolution}, volume={46}, number={1}, pages={84--101}, year={1998}, doi = {10.1007/pl00006286}, publisher={Springer} } %%%%%%%%%%%%%%%%% Ay %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Az %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% B %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ba %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Baa %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bab %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bal %%%%%%%%%%%%%%%%%%%%%%%%% @article{Balter2015, author = {Balter, Vincent and {Nogueira da Costa}, Andre and Bondanese, Victor Paky and Jaouen, Klervia and Lamboux, Aline and Sangrajrang, Suleeporn and Vincent, Nicolas and Fourel, Fran\c{c}ois and T\'{e}louk, Philippe and Gigou, Michelle and L\'{e}cuyer, Christophe and Srivatanakul, Petcharin and Br\'{e}chot, Christian and Albar\`{e}de, Francis and Hainaut, Pierre}, doi = {10.1073/pnas.1415151112}, file = {:home/jl/Documents/Documents\_JL/cours/Th\`{e}se/Exp\'{e}riences/Bibliography/Isotopes in biology/PNAS-2015-Balter-982-5.pdf:pdf}, journal = {Proceedings of the National Academy of Sciences}, number = {4}, pages = {982--985}, title = {{Natural variations of copper and sulfur stable isotopes in blood of hepatocellular carcinoma patients}}, volume = {112}, year = {2015} } %%%%%%%%%%%%%%%%% Bar %%%%%%%%%%%%%%%%%%%%%%%%% @article{barfety1980tectonique, title={Tectonique synsédimentaire liasique dans les massifs cristallins de la zone externe des Alpes occidentales françaises: la faille du col d'Ornon}, author={Barféty, JC and others}, journal = {Académie des Sciences de Paris}, year={1980} } %%%%%%%%%%%%%%%%% Bas %%%%%%%%%%%%%%%%%%%%%%%%% @article{bas1986chemical, title={A chemical classification of volcanic rocks based on the total alkali-silica diagram}, author={BAS, MJ LE and Maitre, RW LE and Streckeisen, Arthur and Zanettin, Bruno and IUGS Subcommission on the Systematics of Igneous Rocks}, journal={Journal of petrology}, volume={27}, number={3}, pages={745--750}, year={1986}, publisher={Oxford University Press} } %%%%%%%%%%%%%%%%% Bb %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bc %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bd %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Be %%%%%%%%%%%%%%%%%%%%%%%%% @book{Beaux2016, author = {Beaux, Jean-François and Platevoet, Bernard and Fogelgesang, Jean-François}, year = {2016}, edition = {2}, editor = {Dunod}, title = {Atlas de pétrologie} } @conference{Besse2013, author = {Besse, Jean}, title = {Apports du Paléomagnétisme à la tectonique des plaques}, booktitle = {Formaterre, Lyon}, institution = {Institut de Physique du Globe de Paris}, year = {2013} } @book{bender2013paleoclimate, title={Paleoclimate}, author={Bender, Michael L}, volume={8}, year={2013}, publisher={Princeton University Press} } %%%%%%%%%%%%%%%%% Bf %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bg %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bh %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bi %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bj %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bk %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bl %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bm %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bn %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bo %%%%%%%%%%%%%%%%%%%%%%%%% @article{bobe2002faunal, title={Faunal change, environmental variability and late Pliocene hominin evolution}, author={Bobe, Ren{\'e} and Behrensmeyer, Anna K and Chapman, Ralph E}, journal={Journal of human evolution}, volume={42}, number={4}, pages={475--497}, year={2002}, publisher={Academic Press} } @book{boivin2017volcanologie, title={Volcanologie de la Cha{\^\i}ne des Puys Massif Central Fran{\c{c}}ais}, author={Boivin, Pierre and Besson, Jean-Claude and Briot, Danielle and Deniel, Catherine and Gourgaud, Alain and Labazuy, Philippe and Langlois, E and De Larouzi{\`e}re, Fran{\c{c}}ois-Dominique and Livet, Marc and Merciecca, Charley and others}, year={2017}, publisher={Parc naturel r{\'e}gional des Volcans d'Auvergne} } @book{bonin2011magmatisme, title={Magmatisme et roches magmatiques-3e {\'e}dition}, author={Bonin, Bernard and Moyen, Jean-Fran{\c{c}}ois}, year={2011}, publisher={Dunod} } @article{boyet2001nature, title={Nature des sources des composants andesitiques des Gres du Champsaur et des Gres de Taveyannaz; implications dans l'evolution des Alpes occidentales au Paleogene}, author={Boyet, Maud and Lapierre, Henriette and Tardy, Marc and Bosch, Delphine and Maury, Rene}, journal={Bulletin de la Soci{\'e}t{\'e} g{\'e}ologique de France}, volume={172}, number={4}, pages={487--501}, year={2001}, publisher={Societe Geologique de France} } %%%%%%%%%%%%%%%%% Bp %%%%%%%%%%%%%%%%%%%%%%%%% @article{BP2018petrol, title = {BP Statistical Review of World Energy}, author = {BP}, year = {2018}, edition = {67} } %%%%%%%%%%%%%%%%% Bq %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Br %%%%%%%%%%%%%%%%%%%%%%%%% @article{brace1970california, title={California earthquakes: Why only shallow focus?}, author={Brace, WF and Byerlee, JD}, journal={Science}, volume={168}, number={3939}, pages={1573--1575}, year={1970}, publisher={American Association for the Advancement of Science} } %%%%%%%%%%%%%%%%% Bs %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bt %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bu %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bua %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bub %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Buc %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bud %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bue %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Buf %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bug %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Buh %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bui %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Buj %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Buk %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bul %%%%%%%%%%%%%%%%%%%%%%%%% @article{Buldini1999, author = {Buldini, Pier Luigi and Cavalli, Silvano and Sharma, Jawahar Lal}, journal = {Journal of agricultural Food chemistry}, keywords = {furnace atomic absorption spectroscopy,ion chromatography,metals,uv photolysis,voltammetry,wine,zeeman graphite}, mendeley-groups = {Th\`{e}se/Protocole/UV treatment}, number = {5}, pages = {1993--1998}, title = {{Determination of Transition Metals in Wine by IC, DPASV-DPCSV, and ZGFAAS Coupled with UV Photolysis}}, volume = {47}, doi = {10.1021/jf980573j}, year = {1999} } %%%%%%%%%%%%%%%%% Bum %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bun %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Buo %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bup %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Buq %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bur %%%%%%%%%%%%%%%%%%%%%%%%% @article{burchett2020revealing, title={Revealing the Dark Threads of the Cosmic Web}, author={Burchett, Joseph N and Elek, Oskar and Tejos, Nicolas and Prochaska, J Xavier and Tripp, Todd M and Bordoloi, Rongmon and Forbes, Angus G}, journal={The Astrophysical Journal Letters}, volume={891}, number={2}, pages={L35}, year={2020}, publisher={IOP Publishing} } @article{Burger2000, author = {Burger, Herman and Capello, Astrid and Schenk, Paul W and Stoter, Gerrit and Brouwer, Jaap and Nooter, Kees}, doi = {10.1006/bbrc.2000.2361}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Cancer/Cancer resistance to Pt/Yeast/burger2000.pdf:pdf}, journal = {Biochemical and Biophysical Research Communications}, keywords = {anticancer agent,cisplatin,dna repair,drug resis-,pde2,saccharomyces cerevisiae,tance}, mendeley-groups = {Th\`{e}se/Cancer/Resistance to Pt/yeast}, pages = {767--774}, title = {{A Genome-Wide Screening in \textit{Saccharomyces cerevisiae} for genes that confer resistance to the anticancer agent cisplatin}}, volume = {774}, year = {2000} } @article{Burstein2004, title={A novel role for {XIAP} in copper homeostasis through regulation of {MURR1}}, author={Burstein, Ezra and Ganesh, Lakshmanan and Dick, Robert D and van De Sluis, Bart and Wilkinson, John C and Klomp, Leo WJ and Wijmenga, Cisca and Brewer, George J and Nabel, Gary J and Duckett, Colin S}, journal={The EMBO journal}, volume={23}, number={1}, pages={244--254}, year={2004}, doi = {10.1038/sj.emboj.7600031}, publisher={EMBO Press} } %%%%%%%%%%%%%%%%% Bus %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% But %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Buu %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Buv %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Buw %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bux %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Buy %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Buz %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bv %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bw %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bx %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% By %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Bz %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% C %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ca %%%%%%%%%%%%%%%%%%%%%%%%% @article{Cadiou2014, author = {Cadiou, Corentin and Garaud, Philippe}, journal = {Astronomy and Astrophysics}, title = {Mixing processes in red giants}, year = {2014}} @article{Cadiou2017, author = {Cadiou, Jean-Loup and Pichat, Sylvain and Bondanese, Victor P and Soulard, Alexandre and Fujii, Toshiyuki and Albar\`{e}de, Francis and Oger, Philippe}, doi = {10.1038/srep44533}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Article\_Saccharomyces/article\_version\_finale/srep44533.pdf:pdf}, journal = {Scientific reports}, mendeley-groups = {Th\`{e}se/My article}, pages = {44533--44543}, volume = {17}, issue = {7}, publisher = {Nature Publishing Group}, title = {{Copper transporters are responsible for copper isotopic fractionation in eukaryotic cells}}, year = {2017} } @article{Cadiou:inprep-1, author = {Cadiou, Jean-Loup and Oger, Philippe and Bondanese, Victor P. and Guschinskaya, Natalia and Soulard, Alexandre and Hernandez, Jean-Alexis and Tacail, Théo and Albarède, Francis and Pichat, Sylvain}, title = {{Lower copper import through Ctr1p and Ctr3p lead to a "tumor" like Cu isotope composition}}, journal = {Metallomics}, year = {\noop{3001}in preparation-1} } @article{Cadiou:inprep-2, author = {Cadiou, Jean-Loup and Pichat, Sylvain and Bondanese, Victor P. and Soulard, Alexandre and Albarède, Francis and Oger, Philippe}, title = {The Cu isotopic composition of cells monitors the resistance to the anticancerous drug cisplatin}, journal = {Scientific Reports}, year = {\noop{3002}in preparation-2} } @article{Cadiou2018, author = {Cadiou, Corentin}, journal = {Communication personnelle}, title = {{Dénombrement des étoiles en fonction de leurs masses}}, year = {2018} } @misc{Cadiou2018Figure, author = {Cadiou, Jean-Loup}, year = {2018}, title = {Figure personnelle (attention, non vérifiée)}, institution = {Université de Toulon} } @phdthesis{cannic1996evolution, title={L'{\'E}VOLUTION MAGMATIQUE ET TECTONO-M{\'E}TAMORPHIQUE DU SUBSTRATUM DU DOMAINE VALAISAN (COMPLEXE DU VERSOYEN, ALPES OCCIDENTALES)-IMPLICATIONS DANS L'HISTOIRE ALPINE}, author={Cannic, S{\'e}bastien}, year={1996}, school={Universit{\'e} Joseph-Fourier-Grenoble I} } @phdthesis{cadiou2017etude, title={Etude des m{\'e}canismes de fractionnement isotopique du cuivre par les cellules eucaryotes. Vers le d{\'e}veloppement d'un nouveau biomarqueur non-invasif de l'apparition d'une chimio-r{\'e}sistance au cisplatine des cellules canc{\'e}reuses}, author={Cadiou, Jean-Loup}, year={2017} } %%%%%%%%%%%%%%%%% Cb %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Cc %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Cd %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ce %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Cf %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Cg %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ch %%%%%%%%%%%%%%%%%%%%%%%%% @misc{Charnoz2018, author = {Charnoz, S.}, journal = {Cours AIM}, title = {{Formation des planètes}}, howpublished= {\href{http://www.aim.ufr-physique.univ-paris7.fr/CHARNOZ/homepage/formation_planete_DEA.pdf}{Cours-Charnoz}}, year = {2018} } %%%%%%%%%%%%%%%%% Ci %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Cj %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ck %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Cl %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Cm %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Cn %%%%%%%%%%%%%%%%%%%%%%%%% @misc{CNRTL2012, title = {Centre National de Ressources Textuelles et Lexicales}, author = {CNRTL, }, year = {2012}, institution = {CNRS, Atilf}, url = {https://www.cnrtl.fr/} } %%%%%%%%%%%%%%%%% Co %%%%%%%%%%%%%%%%%%%%%%%%% @phdthesis{Coutterand2010, title={Etude g{\'e}omorphologique des flux glaciaires dans les Alpes nord-occidentales au Pl{\'e}istoc{\`e}ne r{\'e}cent: du maximum de la derni{\`e}re glaciation aux premi{\`e}res {\'e}tapes de la d{\'e}glaciation}, author={Coutterand, Sylvain}, year={2010}, school={Chamb{\'e}ry} } @misc{Cosentino2019Tectoglob, author = {Cosentino, Philippe}, year = {2019}, url = {http://philippe.cosentino.free.fr/productions/tectoglob3d/}, title = {Tectoglob 3D} } %%%%%%%%%%%%%%%%% Cp %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Cq %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Cr %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Cs %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ct %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Cu %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Cv %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Cw %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Cx %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Cy %%%%%%%%%%%%%%%%%%%%%%%%% @article{Cyert2013, abstract = {All living organisms require nutrient minerals for growth and have developed mechanisms to acquire, utilize, and store nutrient minerals effectively. In the aqueous cellular environment, these elements exist as charged ions that, together with protons and hydroxide ions, facilitate biochemical reactions and establish the electrochemical gradients across membranes that drive cellular processes such as transport and ATP synthesis. Metal ions serve as essential enzyme cofactors and perform both structural and signaling roles within cells. However, because these ions can also be toxic, cells have developed sophisticated homeostatic mechanisms to regulate their levels and avoid toxicity. Studies in Saccharomyces cerevisiae have characterized many of the gene products and processes responsible for acquiring, utilizing, storing, and regulating levels of these ions. Findings in this model organism have often allowed the corresponding machinery in humans to be identified and have provided insights into diseases that result from defects in ion homeostasis. This review summarizes our current understanding of how cation balance is achieved and modulated in baker's yeast. Control of intracellular pH is discussed, as well as uptake, storage, and efflux mechanisms for the alkali metal cations, Na(+) and K(+), the divalent cations, Ca(2+) and Mg(2+), and the trace metal ions, Fe(2+), Zn(2+), Cu(2+), and Mn(2+). Signal transduction pathways that are regulated by pH and Ca(2+) are reviewed, as well as the mechanisms that allow cells to maintain appropriate intracellular cation concentrations when challenged by extreme conditions, i.e., either limited availability or toxic levels in the environment.}, author = {Cyert, Martha S. and Philpott, Caroline C.}, doi = {10.1534/genetics.112.147207}, file = {:home/jl/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Cyert, Philpott - 2013 - Regulation of cation balance in Saccharomyces cerevisiae.pdf:pdf}, journal = {Genetics}, mendeley-groups = {Th\`{e}se/Cu transport in cell/S. cerevisiae/Copper homeostasis}, number = {3}, pages = {677--713}, title = {{Regulation of cation balance in \textit{Saccharomyces cerevisiae}}}, volume = {193}, year = {2013} } %%%%%%%%%%%%%%%%% Cz %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% D %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Da %%%%%%%%%%%%%%%%%%%%%%%%% @article{damotte2010etude, title={L'{\'e}tude de la cro{\^u}te en France par les m{\'e}thodes sismiques: le programme ECORS (1983-1994)}, author={Damotte, Bernard}, journal={Travaux du Comit{\'e} fran{\c{c}}ais d'Histoire de la G{\'e}ologie}, volume={3}, number={tome 24}, pages={31--70}, year={2010} } @article{darwin1837certain, title={On Certain Area of Elevation and Subsidence in the Pacific and Indian Ocean, as deduced from the Study of Coral Formations}, author={Darwin, Charles}, journal={1837 A paper read before the. Geological Society on May 31. Proceedings of the Geological Society}, volume={2}, pages={552--554}, year={1837} } @book{darwin1889structure, title={The structure and distribution of coral reefs}, author={Darwin, Charles and Bonney, Thomas George}, year={1889}, publisher={Smith, Elder} } %%%%%%%%%%%%%%%%% Db %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Dc %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Dd %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% De %%%%%%%%%%%%%%%%%%%%%%%%% @book{Delachaux2016mineraux, author = {Johnsen, Ole and Poirot, J.-P.}, publisher = {Guide Delachaux}, year = {2016}, title = {Guide Delachaux des minéraux} } @phdthesis{delmas2009chronologie, title={Chronologie et impact g{\'e}omorphologique des glaciations quaternaires dans l'est des Pyr{\'e}n{\'e}es}, author={Delmas, Magali Danielle}, year={2009}, school={Paris 1} } @book{delmas2014atmosphere, title={Atmosph{\`e}re, oc{\'e}an et climat}, author={Delmas, Robert and Chauzy, Serge and Verstraete, Jean-Marc}, year={2014}, publisher={Belin} } @book{delmas2005physique, title = {Physique et chimie de l'atmosphère}, author = {Delmas, Robert and Mégie, Gérard and Peuch, Vincent Henri and Brasseur, Guy}, publisher = {Belin}, edition = {2} } @book{dercourt2006geologie, title={G{\'e}ologie: objets, m{\'e}thodes et mod{\`e}les}, author={Dercourt, Jean and Paquet, Jacques and Thomas, Pierre and Langlois, Cyril}, year={2006}, publisher={Dunod} } @article{dezes2004evolution, title={Evolution of the European Cenozoic Rift System: interaction of the Alpine and Pyrenean orogens with their foreland lithosphere}, author={D{\`e}zes, P and Schmid, SM and Ziegler, PA}, journal={Tectonophysics}, volume={389}, number={1-2}, pages={1--33}, year={2004}, publisher={Elsevier} } %%%%%%%%%%%%%%%%% Df %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Dg %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Dh %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Di %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Dj %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Dk %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Dl %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Dm %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Dn %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Do %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Dp %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Dq %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Dr %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ds %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Dt %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Du %%%%%%%%%%%%%%%%%%%%%%%%% @article{Du2012, author = {Du, Xiubo and Wang, Xinghao and Li, Hongyan and Sun, Hongzhe}, doi = {10.1039/c2mt20021j}, file = {:home/jl/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Du et al. - 2012 - Comparison between copper and cisplatin transport mediated by human copper transporter 1 (hCTR1).pdf:pdf}, journal = {Metallomics}, keywords = {Amino Acid Sequence,Biological Transport,Biological Transport: drug effects,Blotting, Western,Cation Transport Proteins,Cation Transport Proteins: chemistry,Cation Transport Proteins: genetics,Cation Transport Proteins: metabolism,Cell Death,Cell Death: drug effects,Cell Extracts,Cisplatin,Cisplatin: metabolism,Cisplatin: toxicity,Copper,Copper: metabolism,Copper: toxicity,HeLa Cells,Humans,Molecular Sequence Data,Mutation,Mutation: genetics,Transfection}, mendeley-groups = {Th\`{e}se,Th\`{e}se/Cancer/Resistance to Pt,Th\`{e}se/Cancer/Resistance to Pt/Ctr1}, number = {7}, pages = {679--685}, title = {{Comparison between copper and cisplatin transport mediated by human copper transporter 1 (hCTR1).}}, volume = {4}, year = {2012} } @article{Dumay2006, author = {Dumay, Quentin C. and Debut, Aurore J. and Nahla, M. Mansour and Milton, H. Saier Jr.}, doi = {10.1159/000092815}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Metal homeostasis/Cu/Cu in cells/Ctr/dumay2006.pdf:pdf}, journal = {Journal of molecular microbiology and biotechnology}, keywords = {heavy metals ؒ transport,ions ؒ binding motif,ؒ channels ؒ copper,ؒ cuprous}, mendeley-groups = {Th\`{e}se/Cu transport in cell/General/Ctr}, pages = {10--19}, title = {{The copper transporter (Ctr) family of Cu\textsuperscript{+} uptake systems}}, volume = {11}, year = {2006} } @article{duToit1927geological, title={A geological comparison of South America with South Africa}, author={DU TOIT, Alex}, journal={Carnegie Institute of Washington Publications}, volume={381}, pages={1--157}, year={1927} } %%%%%%%%%%%%%%%%% Dv %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Dw %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Dx %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Dy %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Dz %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% E %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ea %%%%%%%%%%%%%%%%%%%%%%%%% @article{Easter2010, abstract = {Owing to recent progress in analytical techniques, metallomics are evolving from detecting distinct trace metals in a defined state to monitor the dynamic changes in the abundance and location of trace metals in vitro and in vivo. Vascular metallomics is an emerging field that studies the role of trace metals in vasculature. This review will introduce common metallomics techniques including atomic absorption spectrometry, inductively coupled plasma-atomic emission spectrometry, inductively coupled plasma-mass spectrometry and X-ray fluorescence spectrometry with a summary table to compare these techniques. Moreover, we will summarize recent research findings that have applied these techniques to human population studies in cardiovascular diseases, with a particular emphasis on the role of copper in these diseases. In order to address the issue of interdisciplinary studies between metallomics and vascular biology, we will review the progress of efforts to understand the role of copper in neovascularization. This recent advance in the metallomics field may be a powerful tool to elucidate the signaling pathways and specific biological functions of these trace metals. Finally, we summarize the evidence to support the notion that copper is a dynamic signaling molecule. As a future direction, vascular metallomics studies may lead to the identification of targets for diagnosis and therapy in cardiovascular disease.}, author = {Easter, Renee N. and Chan, Qilin and Lai, Barry and Ritman, Erik L. and Caruso, Joseph A. and Qin, Zhenyu}, doi = {10.1177/1358863X09346656}, journal = {Vascular Medicine}, keywords = {80 and over,Adult,Aged,Analytical,Animals,Blood Vessels,Blood Vessels: metabolism,Blood Vessels: physiopathology,Cardiovascular Diseases,Cardiovascular Diseases: metabolism,Cardiovascular Diseases: physiopathology,Chemistry Techniques,Copper,Copper: metabolism,Female,Humans,Male,Middle Aged,Neovascularization,Physiologic,Signal Transduction}, mendeley-groups = {Th\`{e}se/Cancer/Cancer and Cu/Cancer+vegf}, number = {1}, pages = {61--69}, title = {{Vascular metallomics: copper in the vasculature}}, volume = {15}, year = {2010} } %%%%%%%%%%%%%%%%% Eb %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ec %%%%%%%%%%%%%%%%%%%%%%%%% @misc{EchelleTemps2006, title = {Echelle des temps géologique (version française)}, year = {2006}, editor = {BRGM}, url = {http://sigespoc.brgm.fr/IMG/pdf/brgm_de_l_echelle_des_temps_geologiques_mondial.pdf} } %%%%%%%%%%%%%%%%% Ed %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ee %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ef %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Eg %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Eh %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ei %%%%%%%%%%%%%%%%%%%%%%%%% @article{Eisses2005, author = {Eisses, John F and Chi, Yiqing}, doi = {10.1074/jbc.M500116200}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Metal homeostasis/Cu/Cu in human/CTR1/Eisses2005.pdf:pdf}, journal = {The Journal of biological chemistry}, mendeley-groups = {Th\`{e}se/Cu transport in cell/Human/CTR1}, number = {10}, pages = {9635--9639}, title = {{Stable plasma membrane levels of hCTR1 mediate cellular copper uptake}}, volume = {280}, year = {2005} } %%%%%%%%%%%%%%%%% Ej %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ek %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% El %%%%%%%%%%%%%%%%%%%%%%%%% @book{Elementgeol2018, author = {Renard, Maurice and Lagabrielle, Yves and Martin, Erwan and Rafélis, Marc}, edition = {16}, year = {2018}, editor = {Dunod}, title = {Elements de géologie} } %%%%%%%%%%%%%%%%% Em %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% En %%%%%%%%%%%%%%%%%%%%%%%%% @article{Endo2000, author = {Endo, Tetsuya and Kimura, Osamu and Sakata, Masakatsu}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Cancer/Cancer resistance to Pt/History/endo2000.pdf:pdf}, journal = {Toxicology}, keywords = {apical membrane,basolateral membrane,cisplatin,ok cells,organic cation transporter,tetraethylammonium}, mendeley-groups = {Th\`{e}se/Cancer/Resistance to Pt/History}, pages = {187--195}, title = {{Carrier-mediated uptake of cisplatin by the OK renal epithelial cell line}}, doi = {10.1016/s0300-483x(00)00176-1}, volume = {146}, year = {2000} } @article{Enge2016, author = {Enge, T. Gabriel Gabriel and Field, M. Paul and Jolley, Dianne F and Ecroyd, Heath and Kim, M. Hwan and Dosseto, Anthony}, doi = {10.1039/C6JA00120C}, journal = {Journal of Analytical Atomic Spectrometry}, mendeley-groups = {Th\`{e}se/Isotopes in biology/MC ICP + biology}, pages = {2023--2030}, publisher = {Royal Society of Chemistry}, title = {{An automated chromatography procedure optimized for analysis of stable Cu isotopes from biological materials}}, volume = {31}, year = {2016} } @article{Engelken2014, author = {Engelken, Johannes and Altmeyer, Matthias and Franklin, Renty and Genetics, Evolutionary and Sciences, Medical and Sciences, Diagnostic}, file = {:home/jl/Documents/Documents\_JL/cours/Th\`{e}se/Exp\'{e}riences/Bibliography/Cancer/Cancer and cu/The disruption of trace element homeostasis due to aneuploidy.pdf:pdf}, journal = {BioRxiv}, mendeley-groups = {Th\`{e}se/Cancer}, pages = {1--64}, title = {{The disruption of trace element homeostasis due to aneuploidy as a unifying theme in the etiology of cancer}}, year = {2014}, doi = {10.1101/002105} } %%%%%%%%%%%%%%%%% Eo %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ep %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Eq %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Er %%%%%%%%%%%%%%%%%%%%%%%%% @article{erlich2016morphomechanics, title={Morphomechanics and developmental constraints in the evolution of ammonites shell form}, author={Erlich, Alexander and Moulton, Derek E and Goriely, Alain and Chirat, Regis}, journal={Journal of Experimental Zoology Part B: Molecular and Developmental Evolution}, volume={326}, number={7}, pages={437--450}, year={2016}, publisher={Wiley Online Library} } %%%%%%%%%%%%%%%%% Es %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Et %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Eu %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ev %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ew %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ex %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ey %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ez %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%o %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Fa %%%%%%%%%%%%%%%%%%%%%%%%% @article{faccenna2010subduction, title={Subduction-triggered magmatic pulses: A new class of plumes?}, author={Faccenna, Claudio and Becker, Thorsten W and Lallemand, Serge and Lagabrielle, Yves and Funiciello, Francesca and Piromallo, Claudia}, journal={Earth and Planetary Science Letters}, volume={299}, number={1-2}, pages={54--68}, year={2010}, publisher={Elsevier} } @incollection{fadani2018remembering, title={Remembering Hunger. Museums and the Material Culture of Famine}, author={Fadani, Andrea}, booktitle={Famines During the ʻLittle Ice Ageʼ (1300-1800)}, pages={255--269}, year={2018}, publisher={Springer} } %%%%%%%%%%%%%%%%% Fb %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Fc %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Fd %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Fe %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ff %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Fg %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Fh %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Fi %%%%%%%%%%%%%%%%%%%%%%%%% @article{Fichtinger1985, title={{Adducts of the antitumor drug cis-diamminedichloroplatinum (II) with DNA: formation, identification, and quantitation}}, author={Fichtinger-Schepman, Anne Marie J and Van der Veer, Johannis L and Den Hartog, Jeroen HJ and Lohman, Paul HM and Reedijk, Jan}, journal={Biochemistry}, volume={24}, number={3}, pages={707--713}, year={1985}, doi = {10.1021/bi00324a025}, publisher={ACS Publications} } @article{Finney2007, author = {Finney, Lydia and Mandava, Suneeta and Ursos, Lyann and Zhang, Wen and Rodi, Diane and Vogt, Stefan and Legnini, Daniel and Maser, Jorg and Ikpatt, Francis and Olopade, Olufunmilayo I and Glesne, David}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Cancer/Cancer and cu/Cancer+VEGF/finney2007.pdf:pdf}, journal = {Proceedings of the National Academy of Sciences}, mendeley-groups = {Th\`{e}se/Cancer/Cancer and Cu/Cancer+vegf}, number = {7}, pages = {2247--2252}, title = {{X-ray fluorescence microscopy reveals large-scale relocalization and extracellular translocation of cellular copper during angiogenesis}}, volume = {104}, doi = {10.1073/pnas.0607238104}, year = {2007} } %%%%%%%%%%%%%%%%% Fj %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Fk %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Fl %%%%%%%%%%%%%%%%%%%%%%%%% @article{Flemming1989, author = {Flemming, C.A. and Trevors, J.T.}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/General/Cu-lithosphere/flemming1989.pdf:pdf}, journal = {Water, Air and Soil Pollution}, mendeley-groups = {Th\`{e}se/Cu importance in biology/Cu-lithosphere}, pages = {143--158}, title = {{Copper toxicity and chemistry in the environment: a review}}, volume = {44}, doi = {10.1007/bf00228784}, year = {1989} } %%%%%%%%%%%%%%%%% Fm %%%%%%%%%%%%%%%%%%%%%%%%%* %%%%%%%%%%%%%%%%% Fn %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Fo %%%%%%%%%%%%%%%%%%%%%%%%% @book{foucault2010, title={Dictionnaire de G{\'e}ologie-7e {\'e}dition}, author={Foucault, Alain and Raoult, Jean-Fran{\c{c}}ois}, year={2010}, publisher={Dunod} } @book{foucault2014dictionnaire, title={Dictionnaire de G{\'e}ologie-8e {\'e}d.: Tout en couleur-5000 d{\'e}finitions-Fran{\c{c}}ais/Anglais}, author={Foucault, Alain and Raoult, Jean-Fran{\c{c}}ois and Cecca, Fabrizio and Platevoet, Bernard}, year={2014}, publisher={Dunod} } %%%%%%%%%%%%%%%%% Fp %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Fq %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Fr %%%%%%%%%%%%%%%%%%%%%%%%% @book{FRANCIM2007, author = { {R\'{e}seau} FRANCIM,}, editor = {Springer}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/livre/Pascale Grosclaude, Jacques Est\`{e}ve, Nadine Bossard, Laurent Remontet, Aur\'{e}lien Belot (auth.), Pascale Grosclaude, Jacques Est\`{e}ve, Nadine Bossard, Laurent Remontet, Aur\'{e}lien Belot, Jean Faivre, Anne-Ma.pdf:pdf}, mendeley-groups = {Th\`{e}se/Livre}, pages = {23}, title = {{Survie des patients atteints de cancer en France}}, year = {2007} } @article{Franz2008, author = {Franz, Katherine J}, doi = {10.1038/nchembio0208-85}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/General/review/franz2008.pdf:pdf}, journal = {Nature chemical biology}, keywords = {Cation Transport Proteins,Cation Transport Proteins: chemistry,Cation Transport Proteins: metabolism,Copper,Copper: chemistry,Copper: metabolism,Escherichia coli,Escherichia coli Proteins,Escherichia coli: metabolism,Models,Molecular,Protein Binding}, mendeley-groups = {Th\`{e}se/Cu importance in biology/Cu-proteins}, number = {2}, pages = {85--6}, title = {{Copper shares a piece of the $\pi$.}}, volume = {4}, year = {2008} } %%%%%%%%%%%%%%%%% Fs %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ft %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Fu %%%%%%%%%%%%%%%%%%%%%%%%% @article{Fu1995, author = {Fu, Dadin and Beeler, Troy J and Dunn, Teresa M}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Metal homeostasis/Cu/Cu in Yeast/Excretion/ccc2p/fu1995.pdf:pdf}, journal = {Yeast}, keywords = {- ca,ca2,ccc2,cu2,from the normal vacuolar,in wild-type cells,p-type atpases,pool that is distinct,pool where most ca2,saccharomyces cerevisiae,sensitive mutants}, mendeley-groups = {Th\`{e}se/Cu transport in cell/S. cerevisiae/Excretion}, pages = {283--292}, title = {{Sequence, Mapping and Disruption of CCC2, a Gene that Cross-complements the Ca\textsuperscript{2+}-sensitive Phenotype of csgl Mutants and Encodes a P-type ATPase Belonging to the Cu\textsuperscript{2+}-ATPase Subfamily}}, volume = {11}, doi = {10.1002/yea.320110310}, year = {1995} } @article{Fujii2013, author = {Fujii, Toshiyuki and Moynier, Fr\'{e}d\'{e}ric and Abe, Minori and Nemoto, Keisuke and Albar\`{e}de, Francis}, doi = {10.1016/j.gca.2013.02.007}, journal = {Geochimica et Cosmochimica Acta}, mendeley-groups = {Th\`{e}se/Stable isotopes}, pages = {29--44}, title = {{Copper isotope fractionation between aqueous compounds relevant to low temperature geochemistry and biology}}, volume = {110}, year = {2013} } @article{Fujii2014, author = {Fujii, Toshiyuki and Moynier, Fr\'{e}d\'{e}ric and Blichert-Toft, Janne and Albar\`{e}de, Francis}, doi = {10.1016/j.gca.2014.05.051}, journal = {Geochimica et Cosmochimica Acta}, pages = {553--576}, title = {{Density functional theory estimation of isotope fractionation of Fe, Ni, Cu, and Zn among species relevant to geochemical and biological environments}}, volume = {140}, year = {2014} } %%%%%%%%%%%%%%%%% Fv %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Fw %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Fx %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Fy %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Fz %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% G %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ga %%%%%%%%%%%%%%%%%%%%%%%%% @article{garcia2011catalan, title={The Catalan margin during the Messinian Salinity Crisis: Physiography, morphology and sedimentary record}, author={Garcia, Marga and Maillard, Agn{\`e}s and Aslanian, Daniel and Rabineau, Marina and Alonso, Bel{\'e}n and Gorini, Christian and Estrada, Ferran}, journal={Marine Geology}, volume={284}, number={1-4}, pages={158--174}, year={2011}, publisher={Elsevier} } @book{Gargaud2011, author = {Gargaud, Muriel and Martin, Hervé and Purificaci\'{o}n, L\'{o}pez-Garc\'{i}a and Thierry, Montmerle and Robert, Pascal}, title = {Le soleil, la Terre ... la vie // La quête des origines}, editor = {Belin}, year = {2011}, } @article{gargani2004modelling, title={Modelling of the erosion in the Rhone valley during the Messinian crisis (France)}, author={Gargani, J}, journal={Quaternary International}, volume={121}, number={1}, pages={13--22}, year={2004}, publisher={Elsevier} } %%%%%%%%%%%%%%%%% Gb %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Gc %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Gd %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ge %%%%%%%%%%%%%%%%%%%%%%%%% @misc{GeolAlpes2019, author = {Gidon, Maurice}, url = {http://www.geol-alp.com/}, year = {2019}, title = {GEOL-ALP par M. Gidon (Pr émérite)} } @misc{Geoportail2019, year = {\the \year}, url = {https://www.geoportail.gouv.fr}, author = {Geoportail.fr}} %%%%%%%%%%%%%%%%% Gf %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Gg %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Gh %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Gi %%%%%%%%%%%%%%%%%%%%%%%%% @phdthesis{gillet2004stratigraphie, title={La stratigraphie tertiaire et la surface d'{\'e}rosion messinienne sur les marges occidentales de la Mer Noire: Stratigraphie sismique haute r{\'e}solution}, author={Gillet, Herv{\'e}}, year={2004}, school={Universit{\'e} de Bretagne occidentale-Brest} } %%%%%%%%%%%%%%%%% Gj %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Gk %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Gl %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Gm %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Gn %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Go %%%%%%%%%%%%%%%%%%%%%%%%% @article{goes1999lower, title={A lower mantle source for central European volcanism}, author={Goes, Saskia and Spakman, Wim and Bijwaard, Harmen}, journal={Science}, volume={286}, number={5446}, pages={1928--1931}, year={1999}, publisher={American Association for the Advancement of Science} } @misc{GoogleEarth, journal = {Google Earth}, title = {Google Earth} } %%%%%%%%%%%%%%%%% Gp %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Gq %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Gr %%%%%%%%%%%%%%%%%%%%%%%%% @book{Grappin2008, year = {2008}, author = {Grappin, Christiane and Cardin, Philippe and Goffé, Bruno and Jolivet, Laurent and Montagner, Jean-Paul}, title = {Terre, planète mystérieuse}, institution = {INSU et CNRS}, editor = {Le cherche midi} } @article{greeneevolution2008, title={{\'E}VOLUTION FUTURE DES PRIX ET DE LA DISPONIBILIT{\'E} DES CARBURANTS POUR LES TRANSPORTS}, year = {2008}, author={GREENE, David L} } %%%%%%%%%%%%%%%%% Gs %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Gt %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Gu %%%%%%%%%%%%%%%%%%%%%%%%% @PhDThesis{Gudin2008, title = {{Etude de l’ATPase cuivre eucaryote Ccc2 de \textit{Saccharomyces cerevisiae} : De la localisation à la fonction}}, author = {Gudin, Simon}, school = {Université Joseph Fourier - Grenoble I}, year = {2008} } @article{Gupta1991, author = {Gupta, S K and Shukla, V K and Vaidya, M P and Roy, S K and Gupta, S}, doi = {10.1002/jso.2930460311}, journal = {Journal of surgical oncology}, keywords = {cu,scl,serum copper level,serum zinc level,szl,zn ratio}, mendeley-groups = {Th\`{e}se/Cancer/Cancer and Cu}, number = {3}, pages = {178--181}, title = {{Serum trace elements and Cu/Zn ratio in breast cancer patients.}}, volume = {46}, year = {1991} } @article{Gupte2009, author = {Gupte, Anshul and Mumper, Russell J.}, doi = {10.1016/j.ctrv.2008.07.004}, journal = {Cancer Treatment Reviews}, mendeley-groups = {Th\`{e}se/Cancer/Cancer and Cu}, number = {1}, pages = {32--46}, publisher = {Elsevier Ltd}, title = {{Elevated copper and oxidative stress in cancer cells as a target for cancer treatment}}, volume = {35}, year = {2009} } @book{Guthrie2005, author = {Guthrie, C. and Fink, G}, editor = {{Academic Press}, San Diego.}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/livre/(Methods in Enzymology 351) Christine Guthrie, Gerald R. Fink-Guide to Yeast Genetics and Molecular and Cell Biology Part C-Humana press (2002).pdf:pdf}, mendeley-groups = {Th\`{e}se/Livre}, title = {{Guide to Yeast Genetics and Molecular and Cell Biology}}, volume = {351}, doi = {10.1016/s0076-6879(02)51836-x}, year = {2005} } %%%%%%%%%%%%%%%%% H %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ha %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Haa %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Hah %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Haj %%%%%%%%%%%%%%%%%%%%%%%%% @article{hajdinjak2018reconstructing, title={Reconstructing the genetic history of late Neanderthals}, author={Hajdinjak, Mateja and Fu, Qiaomei and H{\"u}bner, Alexander and Petr, Martin and Mafessoni, Fabrizio and Grote, Steffi and Skoglund, Pontus and Narasimham, Vagheesh and Rougier, H{\'e}l{\`e}ne and Crevecoeur, Isabelle and others}, journal={Nature}, volume={555}, number={7698}, pages={652}, year={2018}, publisher={Nature Publishing Group} } @book{hall1987igneous, title={Igneous petrology}, author={Hall, Anthony}, year={1987}, publisher={Longman Scientific \& Technical Harlow} } %%%%%%%%%%%%%%%%% Ham %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Han %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Har %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Has %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Hb %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Hc %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Hd %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% He %%%%%%%%%%%%%%%%%%%%%%%%% @book{hekinian2008feu, title={Le feu des abysses}, author={Hekinian, Roger and Binard, Nicolas}, year={2008}, publisher={Editions Quae} } %%%%%%%%%%%%%%%%% Hf %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Hi %%%%%%%%%%%%%%%%%%%%%%%%% @book{Hille2001, author = {Hille, Bertil}, edition = {Third}, mendeley-groups = {Th\`{e}se/Livre}, publisher = {Sinauer Associates}, title = {{Ion channels of excitable membranes}}, doi = {10.1007/springerreference_33998}, year = {2001} } @article{Hinnen1978, author = {Hinnen, Albert and Hicks, James B. and Fink, Gerald R.}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/method-bio/Yeast-transformation/Hinnen1978.pdf:pdf}, journal = {Proceedings of the National Academy of Sciences}, mendeley-groups = {Th\`{e}se/Protocole/Yeast transformation}, number = {4}, pages = {1929--1933}, title = {{Transformation of yeast}}, volume = {75}, doi = {10.1073/pnas.75.4.1929}, year = {1978} } @article{Hitzeman1981, title={Expression of a human gene for interferon in yeast.}, author={Hitzeman, Ronald A and Hagie, Frank E and Levine, Howard L and Goeddel, David V and Ammerer, Gustav and Hall, Benjamin D}, journal={Nature}, volume={293}, pages={717}, doi = {10.1038/293717a0}, year={1981} } %%%%%%%%%%%%%%%%% Hj %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Hk %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Hl %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Hm %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Hn %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ho %%%%%%%%%%%%%%%%%%%%%%%%% @article{Holm1996, author = {Holm, Richard H. and Kennepohl, Pierre and Solomon, Edward I.}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Cu-importance-life/Cu-proteins/holm1996.pdf:pdf}, journal = {Chemical reviews}, mendeley-groups = {Th\`{e}se/Cu importance in biology/Cu-proteins}, pages = {2239--2314}, title = {{Structural and functional aspects of metal sites in biology}}, volume = {96}, doi = {10.1021/cr9500390}, year = {1996} } @article{Holzer2006, abstract = {The major copper influx transporter, copper transporter 1 (hCTR1), controls the cellular accumulation of cisplatin in mammalian cells. The goal of this study was to determine the pattern of hCTR1 expression in normal and malignant human tissues. Tissue arrays were stained with an antibody specific for hCTR1 using standard immunohistochemical techniques. Particularly strong staining was noted in the alpha cells of the pancreatic islets, enteroendocrine cells of the gastric mucosa and bronchioles, C cells of the thyroid, and a subset of cells in the anterior pituitary. Frequency and intensity of hCTR1 staining in malignant tissues reflected the levels found in their normal tissue counterparts. For example, neither normal prostate nor prostate cancers expressed hCTR1, whereas it was commonly expressed in both normal colonic epithelium and in colon carcinomas. Strong staining was observed in a limited number of cases of carcinoid tumors, Ewing's sarcoma, and undifferentiated carcinomas. Although all tissues require copper, expression of hCTR1 was highly variable among normal tissues and among the major human malignancies, with the highest levels found in enteroendocrine cells. No hCTR1 expression was found in several common types of cancer, suggesting that hCTR1 expression is not commonly enhanced by transformation.}, author = {Holzer, K and Varki, N M and Le, Q T and Gibson, M and Naredi, P and Howell, S B}, doi = {10.1369/jhc.6A6970.2006}, journal = {Journal of Histochemistry Cytochemistry}, keywords = {Cation Transport Proteins/ biosynthesis Humans Imm}, mendeley-groups = {Th\`{e}se/Cancer/Cancer and CTR}, number = {9}, pages = {1041--1049}, title = {{Expression of the human copper influx transporter 1 in normal and malignant human tissues}}, volume = {54}, year = {2006} } @article{Holzer2004, author = {Holzer, Alison K and Samimi, Goli and Katano, Kuniyuki and Naerdemann, Wiltrud and Lin, Xinjian and Safaei, Roohangiz and Howell, Stephen B}, doi = {10.1124/mol.104.001198.that}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Cancer/Cancer resistance to Pt/Ctr1/CTR1 regulation/holzer2004.pdf:pdf}, journal = {Molecular pharmacology}, mendeley-groups = {Th\`{e}se/Cancer/Resistance to Pt/Ctr1/Ctr1-regulation}, number = {4}, pages = {817--823}, title = {{The Copper Influx Transporter Human Copper Transport Protein 1 Regulates the Uptake of Cisplatin in Human Ovarian Carcinoma Cells}}, volume = {66}, year = {2004} } %%%%%%%%%%%%%%%%% Hp %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Hq %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Hr %%%%%%%%%%%%%%%%%%%%%%%%% @article{Hrgovcic1973, title={Serum copper observations in patients with malignant lymphoma}, author={Hrgovcic, Martin and Tessmer, Carl F and Thomas, Forrest B and Ong, Poen S and Gamble, JF and Shullenberger, CC}, journal={Cancer}, volume={32}, number={6}, pages={1512--1524}, year={1973}, doi = {10.1002/1097-0142(197312)32:6<1512::aid-cncr2820320631>3.0.co;2-p}, publisher={Wiley Online Library} } %%%%%%%%%%%%%%%%% Hs %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ht %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Hu %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Hv %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Hw %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Hx %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Hy %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Hz %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% I %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ia %%%%%%%%%%%%%%%%%%%%%%%%% @article{Iannace2007, author = {Iannace, Alessandro and Vitale, Stefano and D'Errico, M and Mazzoli, Stefano and Staso, Angelida and Macaione, E and Messina, A and Reddy, Steven and Somma, R and Zamparelli, V and Zattin, Massimiliano and Bonardi, G}, year = {2007}, month = {12}, pages = {1165-1186}, title = {The carbonate tectonic units of northern Calabria (Italy): A record of Apulian palaeomargin evolution and Miocene convergence, continental crust subduction and exhumation of HP-LT rocks}, volume = {164}, booktitle = {Journal of the Geological Society} } %%%%%%%%%%%%%%%%% Ib %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ic %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Id %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ie %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% If %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ig %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ih %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ii %%%%%%%%%%%%%%%%%%%%%%%%% @article{Ilicin1971, title={Serum copper and magnesium levels in leukaemia and malignant lymphoma}, author={Ilicin, Gurler}, journal={The Lancet}, volume={298}, number={7732}, pages={1036--1037}, year={1971}, doi = {10.1016/s0140-6736(71)90353-9}, publisher={Elsevier} } %%%%%%%%%%%%%%%%% Ij %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ik %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Il%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Im %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% In %%%%%%%%%%%%%%%%%%%%%%%%% @misc{Indiana2019, year = {2019}, author = {Schieber, Jürgen}, url = {http://www.indiana.edu/~geol105/}, institution = {Indiana University} } %%%%%%%%%%%%%%%%% Io %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ip %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Iq %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ir %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Is %%%%%%%%%%%%%%%%%%%%%%%%% @article{isacks1968seismology, title={Seismology and the new global tectonics}, author={Isacks, Bryan and Oliver, Jack and Sykes, Lynn R}, journal={Journal of Geophysical Research}, volume={73}, number={18}, pages={5855--5899}, year={1968}, publisher={Wiley Online Library} } @article{Ishida2013, abstract = {Copper is an essential trace element, the imbalances of which are associated with various pathological conditions, including cancer, albeit via largely undefined molecular and cellular mechanisms. Here we provide evidence that levels of bioavailable copper modulate tumor growth. Chronic exposure to elevated levels of copper in drinking water, corresponding to the maximum allowed in public water supplies, stimulated proliferation of cancer cells and de novo pancreatic tumor growth in mice. Conversely, reducing systemic copper levels with a chelating drug, clinically used to treat copper disorders, impaired both. Under such copper limitation, tumors displayed decreased activity of the copper-binding mitochondrial enzyme cytochrome c oxidase and reduced ATP levels, despite enhanced glycolysis, which was not accompanied by increased invasiveness of tumors. The antiproliferative effect of copper chelation was enhanced when combined with inhibitors of glycolysis. Interestingly, larger tumors contained less copper than smaller tumors and exhibited comparatively lower activity of cytochrome c oxidase and increased glucose uptake. These results establish copper as a tumor promoter and reveal that varying levels of copper serves to regulate oxidative phosphorylation in rapidly proliferating cancer cells inside solid tumors. Thus, activation of glycolysis in tumors may in part reflect insufficient copper bioavailability in the tumor microenvironment.}, author = {Ishida, Seiko and Andreux, P\'{e}n\'{e}lope and Poitry-Yamate, Carole and Auwerx, Johan and Hanahan, Douglas}, doi = {10.1073/pnas.1318431110}, journal = {Proceedings of the National Academy of Sciences}, keywords = {Adenosine Triphosphate,Adenosine Triphosphate: metabolism,Animals,Biological Availability,Blotting, Western,Copper,Copper: toxicity,DNA Primers,DNA Primers: genetics,Drinking Water,Drinking Water: analysis,Energy Metabolism,Energy Metabolism: drug effects,Glycolysis,Glycolysis: physiology,Membrane Potential, Mitochondrial,Membrane Potential, Mitochondrial: drug effects,Mice,Neoplasms,Neoplasms: physiopathology,Oxidative Phosphorylation,Oxidative Phosphorylation: drug effects,Positron-Emission Tomography,Real-Time Polymerase Chain Reaction,Respiration,Tumor Microenvironment,Tumor Microenvironment: physiology,Water Pollutants, Chemical,Water Pollutants, Chemical: toxicity}, mendeley-groups = {Th\`{e}se/Cancer/Cancer and Cu/Cu level}, number = {48}, pages = {19507--19512}, title = {{Bioavailable copper modulates oxidative phosphorylation and growth of tumors.}}, volume = {110}, year = {2013} } @article{Ishida2002, abstract = {Cisplatin is a chemotherapeutic drug used to treat a variety of cancers. Both intrinsic and acquired resistance to cisplatin, as well as toxicity, limit its effectiveness. Molecular mechanisms that underlie cisplatin resistance are poorly understood. Here we demonstrate that deletion of the yeast CTR1 gene, which encodes a high-affinity copper transporter, results in increased cisplatin resistance and reduced intracellular accumulation of cisplatin. Copper, which causes degradation and internalization of Ctr1 protein (Ctr1p), enhances survival of wild-type yeast cells exposed to cisplatin and reduces cellular accumulation of the drug. Cisplatin also causes degradation and delocalization of Ctr1p and interferes with copper uptake in wild-type yeast cells. Mouse cell lines lacking one or both mouse Ctr1 (mCtr1) alleles exhibit increased cisplatin resistance and decreased cisplatin accumulation in parallel with mCtr1 gene dosage. We propose that cisplatin uptake is mediated by the copper transporter Ctr1p in yeast and mammals. The link between Ctr1p and cisplatin transport may explain some cases of cisplatin resistance in humans and suggests ways of modulating sensitivity and toxicity to this important anticancer drug.}, author = {Ishida, Seiko and Lee, Jaekwon and Thiele, Dennis J and Herskowitz, Ira}, doi = {10.1073/pnas.162491399}, journal = {Proceedings of the National Academy of Sciences}, mendeley-groups = {Th\`{e}se/Cancer/Resistance to Pt/yeast}, number = {22}, pages = {14298--14302}, title = {{Uptake of the anticancer drug cisplatin mediated by the copper transporter Ctr1 in yeast and mammals.}}, volume = {99}, year = {2002} } %%%%%%%%%%%%%%%%% It %%%%%%%%%%%%%%%%%%%%%%%%% @article{Ito1983, author = {Ito, Hisao and Fukuda, Yasuki and Murata, Kousaku and Kimura, Akira}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/method-bio/Yeast-transformation/Ito1983.pdf:pdf}, journal = {Journal of bacteriology}, mendeley-groups = {Th\`{e}se/Protocole/Yeast transformation}, number = {1}, pages = {163--168}, title = {{Transformation of Intact Yeast Cells Treated with Alkali Cations}}, volume = {153}, doi = {10.1080/00021369.1984.10866161}, year = {1983} } %%%%%%%%%%%%%%%%% Iu %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Iv %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Iw %%%%%%%%%%%%%%%%%%%%%%%%% @article{Iwata1995, author = {Iwata, S. and Ostermeier, C. and Ludwig, B. and Michel, H.}, volume = {376}, pages = {660--669}, title = {{Structure at 2.8\AA{} resolution of cytochrome c oxidase from \textit{Paracoccus denitrificans}.}}, doi = {10.1038/376660a0}, year = {1995}, journal = {Nature} } %%%%%%%%%%%%%%%%% Ix %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Iy %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Iz %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% J %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ja %%%%%%%%%%%%%%%%%%%%%%%% @book{Jaujard2015, author = {Jaujar, D.}, year = {2015}, title = {Géologie : Géodynamique -- Pétrologie Etudes de terrains}, publisher = {Maloine}} %%%%%%%%%%%%%%%%% Jb %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Jc %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Jd %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Je %%%%%%%%%%%%%%%%%%%%%%%% @article{Jensen1996, author = {Jensen, Laran T. and Howard, William R. and Strain, Jeffrey J. and Winge, Dennis R. and Culotta, Valeria Cizewski}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Cu-transport/Metal homeostasis/Cu/Cu in Yeast/CUP1/Jensen1996.pdf:pdf}, journal = {The Journal of biological chemistry}, mendeley-groups = {Th\`{e}se/Cu transport in cell/S. cerevisiae/CUP1}, number = {31}, pages = {18514--18519}, title = {{Enhanced Effectiveness of Copper Ion Buffering by CUP1 Metallothionein Compared with CRS5 Metallothionein in \textit{Saccharomyces cerevisiae}}}, doi = {10.1074/jbc.271.31.18514}, volume = {271}, year = {1996} } @article{Jeong2012, author = {Jeong, SeonYoung and Le, An Qi and Lee, Kenneth}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/method-bio/Yeast strains/Jeong2012.pdf:pdf}, journal = {The expedition}, mendeley-groups = {Th\`{e}se/Protocole/Yeast}, title = {{The viability and recovery of \textit{Saccharomyces cerevisiae} after freezing at -84°C with different concentrations of glycerol}}, volume = {1}, year = {2012} } %%%%%%%%%%%%%%%%% Jf %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Jg %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Jh %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ji %%%%%%%%%%%%%%%%%%%%%%%% @article{Jiang2003, title={Cu isotope compositions of Cu-sulfides from hydrothermal ore deposits}, author={Jiang, Shao-Yong and Woodhead, Jon and Lu, Jian-Jun and Gu, Lian-Xing and Ni, Pei and Hua, Ren-Min}, journal={Geochimica et Cosmochimica Acta Supplement}, volume={67}, pages={189-199}, year={2003} } %%%%%%%%%%%%%%%%% Jj %%%%%%%%%%%%%%%%%%%%%%%%* %%%%%%%%%%%%%%%%% Jk %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Jl %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Jm %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Jn %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Jo %%%%%%%%%%%%%%%%%%%%%%%% @conference{Jolivet2004, url = {https://planet-terre.ens-lyon.fr/article/sgf-2004-Jolivet.xml}, year = {2004}, author = {Jolivet, Laurent}, title = {Les Alpes}, booktitle = {Conférence de la Société géologique de France "Enseigner la Géologie"}, organization = {Ecole Normale Supérieure de Lyon} } @article{jouzel2014climat, title={Le climat de la France au XXIe si{\`e}cle Volume 4 Sc{\'e}narios r{\'e}gionalis{\'e}s: {\'e}dition 2014 pour la m{\'e}tropole et les r{\'e}gions d’outre-mer}, author={Jouzel, J and Ouzeau, G and D{\'e}qu{\'e}, M and Jouini, M and Planton, S and Vautard, R}, journal={Rapports de la Direction g{\'e}n{\'e}rale de l’{\'E}nergie et du Climat}, year={2014} } %%%%%%%%%%%%%%%%% Jp %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Jq %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Jr %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Js %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Jt %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ju %%%%%%%%%%%%%%%%%%%%%%%% @article{Jungmann1993, author = {Jungmann, Joern and Reins, Hans-Albert and Lee, Jinhwa and Romeo, Annette and Hassett, Richard and Kosman, Daniel and Jentsch, Stefan}, journal = {The EMBO journal}, keywords = {acel,copper,iron,stress response,transcription}, number = {13}, pages = {5051--5056}, title = {{MAC1, a nuclear regulatory protein related to Cu-dependent transcription factors is involved in Cu/Fe utilization and stress resistance in yeast.}}, volume = {12}, year = {1993} } %%%%%%%%%%%%%%%%% Jv %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Jw %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Jx %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Jy %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Jz %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% K %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ka %%%%%%%%%%%%%%%%%%%%%%%%% @article{Kampfenkel1995, author = {Kampfenkel, Karlheinz and Kushnir, Serguei and Babiychuk, Elena and Inz\'{e}, Dirk and {Van Montagu}, Marc}, journal = {The Journal of biological chemistry}, mendeley-groups = {Th\`{e}se/Cu transport in cell/S. cerevisiae/CTR2}, number = {47}, pages = {28479--28486}, title = {{Molecular characterization of a putative \textit{Arabidopsis thaliana} copper transporter and its yeast homologue}}, volume = {270}, doi = {10.1074/jbc.270.47.28479}, year = {1995} } @article{Kaplan2009, author = {Kaplan, Jack H and Lutsenko, Svetlana}, doi = {10.1074/jbc.R109.031286}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Metal homeostasis/Cu/Cu transport/General/Kaplan2009.pdf:pdf}, journal = {The Journal of biological chemistry}, mendeley-groups = {Th\`{e}se/Cu transport in cell/General}, number = {38}, pages = {25461--25465}, title = {{Copper transport in mammalian cells: special care for a metal with special needs}}, volume = {284}, year = {2009} } @article{Karube1985, author = {Karube, Isao and Tamiya, Eiichi and Matsuoka, Hideaki}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/method-bio/Yeast-transformation/Karube1985.pdf:pdf}, journal = {FEBS Letters}, mendeley-groups = {Th\`{e}se/Protocole/Yeast transformation}, number = {1}, pages = {90--94}, title = {{Transformation of \textit{Saccharomyces cerevisiae} spheroplasts by high electric pulse}}, volume = {182}, year = {1985}, doi = {10.1016/0014-5793(85)81160-1} } @article{Katano2002, author = {Katano, Kuniyuki and Kondo, Akira and Safaei, Roohangiz and Holzer, Alison and Samimi, Goli and Mishima, Misako and Kuo, Yien-ming and Rochdi, Myriam and Howell, Stephen B}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Cancer/Cancer resistance to Pt/History/Katano2002.pdf:pdf}, journal = {Cancer Research}, mendeley-groups = {Th\`{e}se/Cancer/Resistance to Pt/History}, pages = {6559--6565}, title = {{Acquisition of resistance to cisplatin is accompanied by changes in the cellular pharmacology of copper}}, volume = {62}, year = {2002} } @article{Kataoka1985, author = {Kataoka, T and Powers, S and Cameron, S. and Fasano, O. and Goldfarb, M. and Broach, J. and Wigler, M.}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/method-bio/Yeast-human-diseases/kataoka1985.pdf:pdf}, journal = {Cell}, mendeley-groups = {Th\`{e}se/Protocole/Yeast+disease/Yeast+human model}, pages = {19--26}, title = {{Functional Homology of Mammalian and Yeast RAS Genes}}, volume = {3}, doi = {10.1016/0092-8674(85)90304-6}, year = {1985} } @book{Karlin1993, author = {Karlin, Kenneth D. and Tyekelar, Zoltan}, mendeley-groups = {Th\`{e}se/Livre}, title = {{Bioinorganic chemistry of Copper}}, year = {1993}, publisher = {Champan and Hall}, doi = {10.1007/978-94-011-6875-5} city = {New-York and London} } %%%%%%%%%%%%%%%%% Kb %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Kc %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Kd %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ke %%%%%%%%%%%%%%%%%%%%%%%%% @article{Keller2005, abstract = {Ace1 and Mac1 undergo reciprocal copper metalloregulation in yeast cells. Mac1 is functional as a transcriptional activator in copper-deficient cells, whereas Ace1 is a transcriptional activator in copper-replete cells. Cells undergoing a transition from copper-deficient to copper-sufficient conditions through a switch in the growth medium show a rapid inactivation of Mac1 and a corresponding rise in Ace1 activation. Cells analyzed after the transition show a massive accumulation of cellular copper. Under these copper shock conditions we show, using two epitope-tagged variants of Mac1, that copper-mediated inhibition of Mac function is independent of induced protein turnover. The transcription activity of Mac1 is rapidly inhibited in the copper-replete cells, whereas chromatin immunoprecipitation studies showed only partial copper-induced loss of DNA binding. Thus, the initial event in copper inhibition of Mac1 function is likely copper inhibition of the transactivation activity. Copper inhibition of Mac1 in transition experiments is largely unaffected in cells overexpressing copper-binding proteins within the nucleus. Likewise, high expression of a copper-binding, non-DNA-binding Mac1 mutant is without effect on the copper activation of Ace1. Thus, metalloregulation of Ace1 and Mac1 occurs independently.}, author = {Keller, Greg and Bird, Amanda and Winge, Dennis R.}, doi = {10.1128/EC.4.11.1863-1871.2005}, journal = {Eukaryotic Cell}, mendeley-groups = {Th\`{e}se/Cu transport in cell/S. cerevisiae/Mac1}, number = {11}, pages = {1863--1871}, title = {{Independent metalloregulation of Ace1 and Mac1 in \textit{Saccharomyces cerevisiae}}}, volume = {4}, year = {2005} } @article{Kelland2007, author = {Kelland, Lloyd}, doi = {10.1038/nrc2167}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Cancer/Cancer resistance to Pt/History/kelland2007.pdf:pdf}, journal = {Nature reviews}, mendeley-groups = {Th\`{e}se/Cancer/Resistance to Pt/History}, pages = {573--584}, title = {{The resurgence of platinum-based cancer chemotherapy}}, volume = {7}, year = {2007} } %%%%%%%%%%%%%%%%% Kf %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Kg %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Kh %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ki %%%%%%%%%%%%%%%%%%%%%%%%% @article{kimbel2009lucy, title={“Lucy” redux: A review of research on Australopithecus afarensis}, author={Kimbel, William H and Delezene, Lucas K}, journal={American journal of physical anthropology}, volume={140}, number={S49}, pages={2--48}, year={2009}, publisher={Wiley Online Library} } %%%%%%%%%%%%%%%%% Kj %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Kk %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Kl %%%%%%%%%%%%%%%%%%%%%%%%% @article{Klinmann1996, author = {Klinmann, Judith P.}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Cu-importance-life/Cu-proteins/klinman1996.pdf:pdf}, journal = {Chemical reviews}, mendeley-groups = {Th\`{e}se/Cu importance in biology/Cu-proteins}, pages = {2541--2561}, title = {{Mechanisms whereby mononuclear copper proteins functionalize organic substrates}}, volume = {96}, doi = {10.1021/cr950047g}, year = {1996} } @article{Klomp2003, abstract = {We have used indirect immunofluorescense studies and glycosylation-site insertion and deletion mapping to characterize the topology of human copper transporter 1 (hCTR1), the putative human high-affinity copper-import protein. Both approaches indicated that hCTR1 contains three transmembrane domains and that the N-terminus of hCTR1, which contains several putative copper-binding sites, is localized extracellularly, whereas the C-terminus is exposed to the cytosol. Based on previous observations that CTR1 proteins form high-molecular-mass complexes, we investigated directly whether CTR1 proteins interact with themselves. Yeast two-hybrid studies showed that interaction of yeast, mouse, rat and human CTR1 occurs at the sites of their N-terminal domains, and is not dependent on the copper concentration in the growth media. Analysis of deletion constructs indicated that multiple regions in the N-terminus are essential for this self-interaction. In contrast, the N-terminal tail of the presumed low-affinity copper transporter, hCTR2, does not interact with itself. Taken together, these results suggest that CTR1 spans the membrane at least six times, permitting formation of a channel, which is consistent with its proposed role as a copper transporter.}, author = {Klomp, Adriana E M and Juijn, Jenneke A and Van der Gun, Linda T M and van den Berg, Inge E T and Berger, Ruud and Klomp, Leo W J}, doi = {10.1042/BJ20021128}, journal = {The Biochemical journal}, keywords = {copper transport,glycosylation,membrane topology,n-linked,oligomerization,solute carrier}, mendeley-groups = {Th\`{e}se/Cu transport in cell/Human,Th\`{e}se/Cu transport in cell/Human/CTR1}, pages = {881--889}, title = {{The N-terminus of the human copper transporter 1 (hCTR1) is localized extracellularly, and interacts with itself.}}, volume = {370}, year = {2003} } %%%%%%%%%%%%%%%%% Km %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Kn %%%%%%%%%%%%%%%%%%%%%%%%% @article{Knutson2007, abstract = {Erythroid cells of the bone marrow, the most avid consumers of iron in the body, acquire ferric (Fe3+) iron exclusively via the transferrin cycling pathway. A long-standing fundamental molecular question of how ferric iron is handled in this pathway has been recently resolved by the identification of Steap3 (sixtransmembrane epithelial antigen of the prostate 3) as an endosomal ferrireductase needed for efficient utilization of transferrin-delivered iron. Further characterization of Steap3 and other Steap proteins reveals a possible greater role of Steap proteins in iron and copper metabolism.}, author = {Knutson, Mitchell D}, doi = {10.1301/nr.2007.jul.335}, journal = {Nutrition reviews}, keywords = {anemia,cupric reductase,dmt1,ferrire-}, mendeley-groups = {Th\`{e}se/Cancer/reductase/STEAP3,Th\`{e}se/Cancer/reductase}, number = {7}, pages = {335--340}, title = {{Steap proteins: implications for iron and copper metabolism.}}, volume = {65}, year = {2007} } @article{Knight1996, author = {Knight, Simon and Labb\'{e}, Simon and Kwon, Lucy F. and Kosman, Daniel J. and Thiele, Dennis J.}, doi = {10.1101/gad.10.15.1917}, journal = {Genes and Development}, keywords = {Copper,transcription,transport,transposon,yeast}, number = {15}, pages = {1917--1929}, title = {{A widespread transposable element masks expression of a yeast copper transport gene}}, volume = {10}, year = {1996} } %%%%%%%%%%%%%%%%% Ko %%%%%%%%%%%%%%%%%%%%%%%%% @article{el2009messinian, title={Messinian deposits and erosion in northern Tunisia: inferences on Strait of Sicily during the Messinian Salinity Crisis}, author={El Euch-El Koundi, Narjess and Ferry, Serge and Suc, Jean-Pierre and Clauzon, Georges and Melinte-Dobrinescu, Mihaela Carmen and Gorini, Christian and Safra, Anissa and Zargouni, Fouad}, journal={Terra Nova}, volume={21}, number={1}, pages={41--48}, year={2009}, publisher={Wiley Online Library} } @article{korenaga2016evolution, title={Evolution of young oceanic lithosphere and the meaning of seafloor subsidence rate}, author={Korenaga, Tomoko and Korenaga, Jun}, journal={Journal of Geophysical Research: Solid Earth}, volume={121}, number={9}, pages={6315--6332}, year={2016}, publisher={Wiley Online Library} } %%%%%%%%%%%%%%%%% Kp %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Kq %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Kr %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ks %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Kt %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ku %%%%%%%%%%%%%%%%%%%%%%%%% @article{Kuo2007, abstract = {Platinum-based antitumor agents have been effective in the treatments of many human malignancies but the ultimate success of these agents is often compromised by development of drug resistance. One mechanism associated with resistance to platinum drugs is reduced intracellular accumulation owing to impaired drug intake, enhanced outward transport, or both. Mechanisms for transporting platinum drugs were not known until recent demonstrations that import and export transporters involved in maintenance copper homeostasis are also involved in the transport of these drugs. Ctr1, the major copper influx transporter, has been convincingly demonstrated to transport cisplatin and its analogues, carboplatin, and oxaliplatin. Evidence also suggests that the two copper efflux transporters ATP7A and ATP7B regulate the efflux of cisplatin. These observations are intriguing, because conventional thinking of the inorganic physiologic chemistry of cisplatin and copper is quite different. Hence, understanding the underlying mechanistic aspects of these transporters is critically important. While the mechanisms by which hCtr1, ATP7A and ATP7B transport copper ions have been studied extensively, very little is known about the mechanisms by which these transporters shuffle platinum-based antitumor agents. This review discusses the identification of copper transporters as platinum drug transporters, the structural-functional and mechanistic aspects of these transporters, the mechanisms that regulate their expression, and future research directions that may eventually lead to improved efficacy of platinum-based-based drugs in cancer chemotherapy through modulation of their transporters' activities.}, author = {Kuo, Macus Tien and Chen, Helen H W and Song, Im-Sook and Savaraj, Niramol and Ishikawa, Toshihisa}, doi = {10.1007/s10555-007-9045-3}, journal = {Cancer metastasis reviews}, keywords = {Adenosine Triphosphatases,Adenosine Triphosphatases: chemistry,Adenosine Triphosphatases: genetics,Adenosine Triphosphatases: physiology,Amino Acid Sequence,Antineoplastic Agents,Antineoplastic Agents: metabolism,Antineoplastic Agents: pharmacology,Biological Transport,Cation Transport Proteins,Cation Transport Proteins: chemistry,Cation Transport Proteins: genetics,Cation Transport Proteins: physiology,Cisplatin,Cisplatin: metabolism,Cisplatin: pharmacology,Drug Resistance, Neoplasm,Humans,Molecular Sequence Data}, mendeley-groups = {Th\`{e}se/Cu transport in cell/General approach}, number = {1}, pages = {71--83}, title = {{The roles of copper transporters in cisplatin resistance.}}, volume = {26}, year = {2007} } @article{Kuo2012, author = {Kuo, M. T. and Fu, S. and Savaraj, N. and Chen, H. H. W.}, doi = {10.1158/0008-5472.CAN-12-0888}, journal = {Cancer Research}, mendeley-groups = {Th\`{e}se/Cancer/Resistance to Pt/Ctr1}, number = {18}, pages = {4616--4621}, title = {{Role of the human high-affinity copper transporter in copper homeostasis regulation and cisplatin sensitivity in cancer chemotherapy}}, volume = {72}, year = {2012} } @article{Kushnirov2000, author = {Kushnirov, Vitaly V.}, doi = {10.1002/1097-0061(20000630)16:9<857::AID-YEA561>3.0.CO;2-B}, journal = {Yeast}, keywords = {Protein extraction,SDS-PAGE,Yeast}, mendeley-groups = {Th\`{e}se/Protocole/Prot extraction\_yeast}, number = {9}, pages = {857--860}, title = {{Rapid and reliable protein extraction from yeast}}, volume = {16}, year = {2000} } %%%%%%%%%%%%%%%%% Kv %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Kw %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Kx %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ky %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Kz %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% L %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% La %%%%%%%%%%%%%%%%%%%%%%%%% @book{lagabrielle2005visage, title={Le visage sous-marin de la Terre. Elements de geodynamique oceanique}, author={Lagabrielle, Yves and Lallemand, Serge and Gente, Pascal and Leroy, Sylvie and Collot, Jean-Yves}, year={2005}, publisher={Commission de la Carte G{\'e}ologique du Monde. CNRS} } @book{Lamotte2019objets, title={Objets et structures g{\'e}ologiques en trois dimensions: Observation, interpr{\'e}tation et construction de mod{\`e}les en 3D}, author={de Lamotte, Dominique Frizon and Leturmy, Pascale and Souloumiac, Pauline}, year={2019}, publisher={Dunod} } @misc{Larousse2019, year = {2019}, editor = {Larousse}, title = {Dictionnaire Larousse en ligne}, author = {Larousse, Dictionnaire}, url = {https://www.larousse.fr/dictionnaires/} } @book{larroque2001physique, title={Physique de la terre solide: obserations et th{\'e}ories}, author={Larroque, Christophe and Virieux, Jean}, year={2001}, publisher={Gordon and Breach Science Publ.} } @article{lagabrielle1996structure, title={Structure et gen{\`e}se des ophiolites alpines, confrontation avec des donn{\'e}es r{\'e}centes sur la lithosph{\`e}re oc{\'e}anique}, author={LAGABRIELLE, Y and LEMOINE, M}, journal={Biologie g{\'e}ologie (Paris)}, number={1}, pages={127--152}, year={1996} } %%%%%%%%%%%%%%%%% Lb %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Lc %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ld %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Le %%%%%%%%%%%%%%%%%%%%%%%%% @article{leclercq2013data, title={A data set of world-wide glacier length fluctuations}, author={Leclercq, PW and Oerlemans, J and Basagic, HJ and Bushueva, I and Cook, AJ and Le Bris, R}, journal={Cryos. Discuss}, volume={7}, number={5}, pages={4775--4811}, year={2013} } @book{lemoine2014massif, title={Le massif du Chenaillet. Montgen{\`e}vre (Alpes franco-italiennes). Les ophiolites et l'oc{\'e}an disparu}, author={Lemoine, Marcel and Cirio, Raymond and Lagabrielle, Yves}, year={2014} } @article{lemanis2018finite, title={Finite element analysis as a method to study molluscan shell mechanics}, author={Lemanis, Robert and Zlotnikov, Igor}, journal={Advanced Engineering Materials}, volume={20}, number={3}, pages={1700939}, year={2018}, publisher={Wiley Online Library} } @article{lePichon1968sea, title={Sea-floor spreading and continental drift}, author={Le Pichon, Xavier}, journal={Journal of Geophysical Research}, volume={73}, number={12}, pages={3661--3697}, year={1968}, publisher={Wiley Online Library} } %%%%%%%%%%%%%%%%% Lf %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Lg %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Lh %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Li %%%%%%%%%%%%%%%%%%%%%%%%% @article{Li1991, author = {Li, Yu and Togashi, Yuji and Sato, Shin and Emoto, Tadasu and Kang, Jong-Hon and Takeichi, Noritoshi and Kobayashi, Hiroshi and Kojima, Yutaka and Une, Yoshie and Uchino, Junichi}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Cancer/Cancer and cu/cancer+cu-concentration/Li1991.pdf:pdf}, journal = {Journal of Cancer Research}, mendeley-groups = {Th\`{e}se/Cancer/Cancer and Cu/Cu level}, pages = {490--492}, title = {{Abnormal Copper Accumulation in Non-cancerous and Cancerous Liver Tissues of LEC Rats Developing Hereditary Hepatitis and Spontaneous Hepatoma}}, volume = {82}, doi = {10.1111/j.1349-7006.1991.tb01876.x}, year = {1991} } @article{li2003jurassic, title={Jurassic gabbro-granite-syenite suites from Southern Jiangxi Province, SE China: age, origin, and tectonic significance}, author={Li, Xian-Hua and Chen, Zhigang and Liu, Dunyi and Li, Wu-Xian}, journal={International Geology Review}, volume={45}, number={10}, pages={898--921}, year={2003}, publisher={Taylor \& Francis} } @article{liu1985u, title={U-Pb zircon geochronology of late Archaean metamorphic rocks in the Taihangshan—Wutaishan area, North China}, author={Liu, Dunyi and Page, RW and Compston, W and Wu, Jaishan}, journal={Precambrian Research}, volume={27}, number={1-3}, pages={85--109}, year={1985}, publisher={Elsevier} } @misc{LithothequeENS, url = {https://lithotheque.ens-lyon.fr/}, year = {\the \year}, author = {Lithotheque-ENS-Lyon, } } @misc{LithothequeMarseille2009, url = {http://www.lithotheque.ac-aix-marseille.fr/}, year = {2009}, author = {Lithotheque-Aix-Marseille, } } %%%%%%%%%%%%%%%%% Lia %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Liu %%%%%%%%%%%%%%%%%%%%%%%%% @article{Liu1997, author = {Liu, Xiu Fen and Supek, Frantisek and Nelson, Nathan and Culotta, Valeria Cizewski}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Metal homeostasis/Cu/Cu in Yeast/LAI-SMF1/J. Biol. Chem.-1997-Liu-11763-9.pdf:pdf}, journal = {The Journal of Biological Chemistry}, mendeley-groups = {Th\`{e}se/Cu transport in cell/S. cerevisiae/LAI - SMF1}, number = {18}, pages = {11763--11769}, title = {{Negative Control of Heavy Metal Uptake by the \textit{Saccharomyces cerevisiae} BSD2 Gene}}, volume = {272}, year = {1997} } @article{Liu2007, author = {Liu, Jingxuan and Sitaram, Anand and Burd, Christopher G}, doi = {10.1111/j.1600-0854.2007.00616.x}, journal = {Traffic}, mendeley-groups = {Th\`{e}se/Cu transport in cell/S. cerevisiae/Regulation,Th\`{e}se/Cu transport in cell/S. cerevisiae/Endocytosis}, number = {10}, pages = {1375--1384}, title = {{Regulation of copper-dependent endocytosis and vacuolar degradation of the yeast copper transporter, Ctr1p, by the Rsp5 ubiquitin ligase.}}, volume = {8}, year = {2007} } @article{Liu2012, abstract = {Copper is an indispensable metal for life. For convenience of genetic manipulation and sharing similar metabolic pathway of metals with mammalian cells, the yeast Saccharomyces cerevisiae is widely used for metal homeostasis studies. Storage and mobilization of copper ions in yeast vacuoles or mammalian lysosomes are important for cells to avoid their toxicity and elevate their utility. Though regulation of other genes involved in copper homeostasis is well understood, the regulation of gene encoding low-affinity copper transporter Ctr2p, which mediates mobilization of vacuolar or lysosomal stored copper ions, is still unclear. In this study, we found that copper depletion can upregulate yeast CTR2 gene transcription while copper overload downregulate it. The copper-depletion induced CTR2 transcription can be abrogated by genetic deletion of copper-sensing transcription factor Mac1p. Though absent of consensus Mac1p binding sequences, CTR2 promoter region is demonstrated to be occupied by Mac1p, according to our results of chromatin immunoprecipitation (ChIP) assay. Overexpression of Mac1p can upregulate CTR2 transcription and partially complement the growth defect of copper-deficient yeast strain. Taken together, our results suggest that Mac1p can activate the expression of vacuolar copper transporter Ctr2p in response to copper deficiency, resulting in yeast resistance to copper starvation. ?? 2012 Elsevier Inc.}, author = {Liu, Lihua and Qi, Jin and Yang, Zemin and Peng, Lianghong and Li, Chenghua}, doi = {10.1016/j.bbrc.2012.03.040}, journal = {Biochemical and Biophysical Research Communications}, keywords = {Copper homeostasis,Mobilization,Transcription factor,Transporter,Yeast}, mendeley-groups = {Th\`{e}se/Cu transport in cell/S. cerevisiae/CTR2}, number = {3}, pages = {600--604}, publisher = {Elsevier Inc.}, title = {{Low-affinity copper transporter CTR2 is regulated by copper-sensing transcription factor Mac1p in \textit{Saccharomyces cerevisiae}}}, volume = {420}, year = {2012} } %%%%%%%%%%%%%%%%% Lin %%%%%%%%%%%%%%%%%%%%%%%%% @article{Lin2002, author = {Lin, Xinjian and Okuda, Tsuyoshi and Holzer, Alison and Howell, Stephen B}, file = {:home/jl/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Lin et al. - 2002 - The Copper Transporter CTR1 Regulates Cisplatine Uptake in Saccharomyces cerevisiae.pdf:pdf}, journal = {Molecular pharmacology}, mendeley-groups = {Th\`{e}se/Cancer/Resistance to Pt,Th\`{e}se/Cancer/Resistance to Pt/Ctr1,Th\`{e}se/Cancer/Resistance to Pt/yeast}, number = {5}, pages = {1154--1159}, title = {{The Copper Transporter CTR1 Regulates Cisplatine Uptake in \textit{Saccharomyces cerevisiae}}}, volume = {62}, doi = {10.1124/mol.62.5.1154}, year = {2002} } @book{Linder1991, author = {Linder, Maria C.}, edition = {First}, mendeley-groups = {Th\`{e}se/Livre}, publisher = {Springer Science}, title = {{Biochemistry of Copper}}, doi = {10.1007/978-1-4757-9432-8_4}, year = {1991} } @article{Linder1996, author = {Linder, C and Hazegh-Azam, Maryam}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Cu-importance-life/chemistry/797S.full.pdf:pdf}, journal = {American society for clinical nutrition}, mendeley-groups = {Th\`{e}se/Cu importance in biology/Cu-proteins}, pages = {797--811}, title = {{Copper biochemistry and molecular biology}}, volume = {63}, doi = {0.1385/1-59259-288-0:003}, year = {1996} } @article{Linder2001, author = {Linder, Maria C.}, doi = {10.1016/S0027-5107(01)00076-8}, journal = {Mutation Research}, keywords = {Blood plasma,Copper,Cytoplasmic protein,DNA damage}, mendeley-groups = {Th\`{e}se/Cu transport in cell/S. cerevisiae/Cu and cells}, number = {1-2}, pages = {141--152}, title = {{Copper and genomic stability in mammals}}, volume = {475}, year = {2001} } %%%%%%%%%%%%%%%%% Lj %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Lk %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ll %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Lm %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ln %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Lo %%%%%%%%%%%%%%%%%%%%%%%%% @article{Lobo2016, author = {Lobo, Lara and Costas-rodr\'{\i}guez, Marta and Vicente, Juan Carlos De and Pereiro, Rosario and Vanhaecke, Frank and Sanz-medel, Alfredo}, doi = {10.1016/j.talanta.2016.12.007}, journal = {Talanta}, keywords = {Elemental determinations,Isotopic analysis,Oral Squamous Cell Carcinoma,Sector-field ICP-MS,multi-collector ICP-MS}, mendeley-groups = {Th\`{e}se/Isotopes in biology/MC ICP + biology}, pages = {92--97}, publisher = {Elsevier}, title = {{Elemental and isotopic analysis of oral squamous cell carcinoma tissues using sector-field and multi-collector ICP-mass spectrometry}}, volume = {165}, year = {2016} } @article{Loehrer1984, author = {Loehrer, Patrick and Einhorn, Lawrence}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Cancer/Cancer resistance to Pt/History/loehrer1984.pdf:pdf}, journal = {Annals of internal medicins}, mendeley-groups = {Th\`{e}se/Cancer/Resistance to Pt/History}, pages = {704--713}, title = {{Diagnosis and treatment, Drugs five years later: cisplatin}}, volume = {100}, year = {1984} } @article{Loh1992, author = {Loh, S.Y. and Mistry, P. and Kelland, L.R. and Abel, G. and Harrap, K.R.}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Cancer/Cancer resistance to Pt/History/Loh1992.pdf:pdf}, journal = {Breast Journal of cancer}, mendeley-groups = {Th\`{e}se/Cancer/Resistance to Pt/History}, pages = {1109--1115}, title = {{Reduced drug accumulation as a major mechanism of acquired resistance to cisplatin in a human ovarian carcinoma cell line: circumvention studies using novel platinum (II) and (IV) ammine/amine complexes}}, volume = {118}, doi = {10.1038/bjc.1992.419}, year = {1992} } @article{Lorand1993, title={Copper and noble metal enrichments across the lithosphere—asthenosphere boundary of mantle diapirs: evidence from the Lanzo lherzolite massif}, author={Lorand, JP and Keays, RR and Bodinier, JL}, journal={Journal of Petrology}, volume={34}, number={6}, pages={1111--1140}, year={1993}, doi = {10.1093/petrology/34.6.1111}, publisher={Oxford Univ Press} } %%%%%%%%%%%%%%%%% Lp %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Lq %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Lr %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ls %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Lt %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Lu %%%%%%%%%%%%%%%%%%%%%%%%% @article{Lutsenko2010, author = {Lutsenko, Svetlana}, doi = {10.1016/j.cbpa.2010.01.003}, journal = {Current opinion in chemical biology}, keywords = {Amino Acid Sequence,Animals,Cation Transport Proteins,Cation Transport Proteins: chemistry,Cation Transport Proteins: metabolism,Copper,Copper: metabolism,Humans,Ion Transport,Models, Molecular,Molecular Sequence Data,Sequence Alignment}, mendeley-groups = {Th\`{e}se/Cancer,Th\`{e}se/Cu transport in cell,Th\`{e}se/Cu transport in cell/Human}, number = {2}, pages = {211--217}, title = {{Human copper homeostasis: a network of interconnected pathways.}}, volume = {14}, year = {2010} } @article{Lutsenko2007, abstract = {Copper-transporting ATPases (Cu-ATPases) ATP7A and ATP7B are evolutionarily conserved polytopic membrane proteins with essential roles in human physiology. The Cu-ATPases are expressed in most tissues, and their transport activity is crucial for central nervous system development, liver function, connective tissue formation, and many other physiological processes. The loss of ATP7A or ATP7B function is associated with severe metabolic disorders, Menkes disease, and Wilson disease. In cells, the Cu-ATPases maintain intracellular copper concentration by transporting copper from the cytosol across cellular membranes. They also contribute to protein biosynthesis by delivering copper into the lumen of the secretory pathway where metal ion is incorporated into copper-dependent enzymes. The biosynthetic and homeostatic functions of Cu-ATPases are performed in different cell compartments; targeting to these compartments and the functional activity of Cu-ATPase are both regulated by copper. In recent years, significant progress has been made in understanding the structure, function, and regulation of these essential transporters. These studies raised many new questions related to specific physiological roles of Cu-ATPases in various tissues and complex mechanisms that control the Cu-ATPase function. This review summarizes current data on the structural organization and functional properties of ATP7A and ATP7B as well as their localization and functions in various tissues, and discusses the current models of regulated trafficking of human Cu-ATPases.}, author = {Lutsenko, S. and Barnes, N. L. and Bartee, M. Y. and Dmitriev, O. Y.}, doi = {10.1152/physrev.00004.2006}, journal = {Physiological Reviews}, mendeley-groups = {Th\`{e}se/Cu transport in cell/Human/ATPase}, number = {3}, pages = {1011-1046}, title = {{Function and Regulation of Human Copper-Transporting ATPases}}, volume = {87}, year = {2007} } %%%%%%%%%%%%%%%%%% M %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Ma %%%%%%%%%%%%%%%%%%%%%%%%% @article{manatschal2011chenaillet, title={The Chenaillet Ophiolite in the French/Italian Alps: An ancient analogue for an oceanic core complex?}, author={Manatschal, Gianreto and Sauter, Daniel and Karpoff, Anne Marie and Masini, Emmanuel and Mohn, Geoffroy and Lagabrielle, Yves}, journal={Lithos}, volume={124}, number={3-4}, pages={169--184}, year={2011}, publisher={Elsevier} } @conference{Martin2012EvolutionCC, author = {Martin, Hervé}, title = {Origine et évolution de la croûte continentale}, year = {2012}, url = {https://www.pedagogie.ac-aix-marseille.fr/upload/docs/application/pdf/2012-04/conference_croute_continentale_hmartin.pdf}, organization = {Université d'Aix Marseille}, note = {H. Martin est Pr.U de Clermont-Ferrant, spécialiste du magmatisme à l'archéen} } @book{mascle2015roches, title={Les roches, m{\'e}moire du temps: Nouvelle {\'e}dition avec exercices corrig{\'e}s}, author={Mascle, Georges}, year={2015}, publisher={EDP sciences} } @article{Massin2011, title={Structures and evolution of the plumbing system of Piton de la Fournaise volcano inferred from clustering of 2007 eruptive cycle seismicity}, author={Massin, Fr{\'e}d{\'e}rick and Ferrazzini, Val{\'e}rie and Bach{\`e}lery, Patrick and Nercessian, Alexandre and Duputel, Zacharie and Staudacher, Thomas}, journal={Journal of Volcanology and Geothermal Research}, volume={202}, number={1-2}, pages={96--106}, year={2011}, publisher={Elsevier} } %%%%%%%%%%%%%%%%%% Mb %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mc %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Md %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Me %%%%%%%%%%%%%%%%%%%%%%%%% @article{merle2001formation, title={The formation of the West European Rift; a new model as exemplified by the Massif Central area}, author={Merle, Olivier and Michon, Laurent}, journal={Bulletin de la Soci{\'e}t{\'e} G{\'e}ologique de France}, volume={172}, number={2}, pages={213--221}, year={2001}, publisher={Societe Geologique de France} } %%%%%%%%%%%%%%%%%% Mf %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mg %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mh %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mi %%%%%%%%%%%%%%%%%%%%%%%%% @article{michon2001evolution, title={The evolution of the Massif Central Rift; spatio-temporal distribution of the volcanism}, author={Michon, Laurent and Merle, Olivier}, journal={Bulletin de la Soci{\'e}t{\'e} g{\'e}ologique de France}, volume={172}, number={2}, pages={201--211}, year={2001}, publisher={Societe Geologique de France} } @misc{Mindat2019, url = {https://www.mindat.org}, year = {\the \year}, author = {Mindat, } } %%%%%%%%%%%%%%%%%% Mj %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mk %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Ml %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mm %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mn %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mo %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Moa %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mob %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Moc %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mod %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Moe %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mof %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mog %%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Moh %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Moi %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Moj %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mok %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mol %%%%%%%%%%%%%%%%%%%%%%%%% @article{mollai2014genetic, title={Genetic relationships between skarn ore deposits and magmatic activity in the Ahar region, Western Alborz, NW Iran}, author={Mollai, Habib and Pe-Piper, Georgia and Dabiri, Rahim}, journal={Geologica Carpathica}, volume={65}, number={3}, pages={209--227}, year={2014}, publisher={De Gruyter Open} } %%%%%%%%%%%%%%%%%% Mom %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mon %%%%%%%%%%%%%%%%%%%%%%%%% @book{montel2014mineralogie, title={Min{\'e}ralogie}, author={Montel, Jean-Marc and Martin, Fran{\c{c}}ois}, year={2014}, publisher={Dunod} } %%%%%%%%%%%%%%%%%% Moo %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mop %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Moq %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mor %%%%%%%%%%%%%%%%%%%%%%%%% @article{morgan1968rises, title={Rises, trenches, great faults, and crustal blocks}, author={Morgan, W Jason}, journal={Journal of Geophysical Research}, volume={73}, number={6}, pages={1959--1982}, year={1968}, publisher={Wiley Online Library} } %%%%%%%%%%%%%%%%%% Mos %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mot %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mou %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mov %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mow %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mox %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Moy %%%%%%%%%%%%%%%%%%%%%%%%% @manual{Moyen2005, title = {Les grands traits de l’histoire géologique de la France (métropolitaine)}, author = {Moyen, Jean-François}, year = {2005}, note = {Ecrit par JF Moyen, Pr à l'université de Saint-Etienne}, url ={http://jfmoyen.free.fr/IMG/pdf/poly-france.pdf} } %%%%%%%%%%%%%%%%%% Mp %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mq %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mr %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Ms %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mt %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mu %%%%%%%%%%%%%%%%%%%%%%%%% @book{Muller2005, title={Manuel de survie {\`a} l'usage de l'enseignant (m{\^e}me d{\'e}butant)}, author={Muller, Fran{\c{c}}ois}, year={2005}, publisher={Editions l'Etudiant} } %%%%%%%%%%%%%%%%%% Mv %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mw %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mx %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% My %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%% Mz %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% N %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Na %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Nb %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Nc %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Nd %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ne %%%%%%%%%%%%%%%%%%%%%%%%% @article{Nevitt2012, author = {Nevitt, Tracy and \"{O}hrvik, Helena and Thiele, Dennis J}, doi = {10.1016/j.bbamcr.2012.02.011}, journal = {Biochimica et biophysica acta}, number = {9}, pages = {1580--1593}, publisher = {Elsevier B.V.}, title = {{Charting the travels of copper in eukaryotes from yeast to mammals.}}, volume = {1823}, year = {2012} } %%%%%%%%%%%%%%%%% Nf %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ng %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Nh %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ni %%%%%%%%%%%%%%%%%%%%%%%%% @article{nicolas1990lithospheric, title={Lithospheric wedging in the western Alps inferred from the ECORS-CROP traverse}, author={Nicolas, A and Hirn, A and Nicolich, R and Polino, R}, journal={Geology}, volume={18}, number={7}, pages={587--590}, year={1990}, publisher={Geological Society of America} } @book{nicollet2017metamorphisme, title={M{\'e}tamorphisme et g{\'e}odynamique-2e {\'e}d.: Cours, Exercices corrig{\'e}s, 16 planches couleurs}, author={Nicollet, Christian}, year={2017}, publisher={Dunod} } @article{nichols1939viscosity, title={Viscosity of lava}, author={Nichols, Robert L}, journal={the Journal of Geology}, volume={47}, number={3}, pages={290--302}, year={1939}, publisher={University of Chicago Press} } @book{nichols2009sedimentology, title={Sedimentology and stratigraphy}, author={Nichols, Gary}, year={2009}, publisher={John Wiley \& Sons} } @misc{Nicollet2019, author = {Nicollet, Christian}, url = {http://christian.nicollet.free.fr/page/Alpes/chenaillet/chenaillet.html}, title = {Page personnelle Christian Nicollet (Pr)} } %%%%%%%%%%%%%%%%% Nj %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Nk %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Nl %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Nm %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Nn %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% No %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Np %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Nq %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Nr %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ns %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Nt %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Nu %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Nv %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Nw %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Nx %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ny %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Nz %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% O %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Oa %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ob %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Oc %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Od %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Oe %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Of %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Og %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Oh %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Oi %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Oj %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ok %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ol %%%%%%%%%%%%%%%%%%%%%%%%% @article{Olive2015, title={Sensitivity of seafloor bathymetry to climate-driven fluctuations in mid-ocean ridge magma supply}, author={Olive, J-A and Behn, Mark D and Ito, Garrett and Buck, W Roger and Escart{\'\i}n, J and Howell, Samuel}, journal={Science}, volume={350}, number={6258}, pages={310--313}, year={2015}, publisher={American Association for the Advancement of Science} } %%%%%%%%%%%%%%%%% Om %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% On %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Oo %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Op %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Oq %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Or %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Os %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ot %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ou %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ov %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ow %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ox %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Oy %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Oz %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% P %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Pa %%%%%%%%%%%%%%%%%%%%%%%%% @book{pachauri2014climate, title={Climate change 2014: synthesis report. Contribution of Working Groups I, II and III to the fifth assessment report of the Intergovernmental Panel on Climate Change}, author={Pachauri, Rajendra K and Allen, Myles R and Barros, Vicente R and Broome, John and Cramer, Wolfgang and Christ, Renate and Church, John A and Clarke, Leon and Dahe, Qin and Dasgupta, Purnamita and others}, year={2014}, publisher={Ipcc} } @inbook{Pais1997, title={The handbook of trace elements}, chapter = {Copper}, author={Pais, Istvan and Jones Jr, J Benton}, year={1997}, doi = {10.2134/jeq1998.00472425002700040041x}, publisher={CRC Press} } @article{Paik1999, author = {Paik, Seung R and Shin, Hyun-ju and Lee, Ju-hyun and Chang, Chung-soon and Kim, Jongsun}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Diseases/Parkinson/Paik1999.pdf:pdf}, journal = {Biochemical journal}, keywords = {alzheimer,ease,lewy body,neurodegenerative disease,parkinson,protein-aggregation,s dis-,s disease}, mendeley-groups = {Th\`{e}se/Diseases/Parkinson}, pages = {821--828}, title = {{Copper(II)-induced self-oligomerization of $\alpha$-synuclein}}, doi = {10.1042/0264-6021:3400821}, volume = {828}, year = {1999} } @article{Paris2001, author = {Paris, Irmgard and Dagnino-subiabre, Alexies and Marcelain, Katherine and Bennett, Lori B and Segura-aguilar, Juan and Caviedes, Pablo}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Diseases/Parkinson/Paris2001.pdf:pdf}, journal = {Journal of Neurochemistry}, pages = {519--529}, title = {{Copper neurotoxicity is dependent on dopamine-mediated copper uptake and one-electron reduction of aminochrome in a rat substantia nigra neuronal cell line}}, volume = {77}, doi = {10.1046/j.1471-4159.2001.00243.x}, year = {2001} } @article{Payne2007, abstract = {Lysyl oxidase (LOX) is an extracellular matrix (ECM) enzyme that catalyzes the cross-linking of collagens or elastin in the extracellular compartment, thereby regulating the tensile strength of tissues. However, recent reports have demonstrated novel roles for LOX, including the ability to regulate gene transcription, motility/migration, and cell adhesion. These diverse functions have led researchers to hypothesize that LOX may have multiple roles affecting both extra- and intracellular cell function(s). Particularly noteworthy is aberrant LOX expression and activity that have been observed in various cancerous tissues and neoplastic cell lines. Both down and upregulation of LOX in tumor tissues and cancer cell lines have been described, suggesting a dual role for LOX as a tumor suppressor, as well as a metastasis promoter gene--creating a conundrum within the LOX research field. Here, we review the body of evidence on LOX gene expression, regulation, and function(s) in various cancer cell types and tissues, as well as stromal-tumor cell interactions. Lastly, we will examine putative mechanisms in which LOX facilitates breast cancer invasion and metastasis. Taken together, the literature demonstrates the increasingly important role(s) that LOX may play in regulating tumor progression and the necessity to elucidate its myriad mechanisms of action in order to identify potentially novel therapeutics.}, author = {Payne, Stacey L and Hendrix, Mary J C and Kirschmann, Dawn }, doi = {10.1002/jcb.21371}, journal = {Journal of Cellular Biochemistry}, keywords = {Copper,Copper: metabolism,Epithelial Cells,Epithelial Cells: cytology,Epithelial Cells: physiology,Epithelium,Epithelium: physiology,Extracellular Matrix,Extracellular Matrix: enzymology,Gene Expression Regulation, Enzymologic,Genes, Tumor Suppressor,Humans,Neoplasm Invasiveness,Neoplasm Metastasis,Neoplasms,Neoplasms: enzymology,Neoplasms: pathology,Protein-Lysine 6-Oxidase,Protein-Lysine 6-Oxidase: genetics,Protein-Lysine 6-Oxidase: metabolism,Stromal Cells,Stromal Cells: cytology,Stromal Cells: physiology,Substrate Specificity}, mendeley-groups = {Th\`{e}se/Cancer/Cancer and Cu/Cu and Lysine}, number = {6}, pages = {1338--1354}, title = {{Paradoxical roles for lysyl oxidases in cancer--a prospect.}}, volume = {101}, year = {2007} } %%%%%%%%%%%%%%%%% Pb %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Pc %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Pd %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Pe %%%%%%%%%%%%%%%%%%%%%%%%% @article{pecher1971donnees, title={Donn{\'e}es nouvelles sur les granites pal{\'e}ozo{\"\i}ques du massif des Ecrins—Pelvoux (Alpes du Haut-Dauphin{\'e}. France)}, author={P{\'E}CHER, Arnaud}, journal={G{\'e}aI. Alpine}, volume={47}, pages={91--102}, year={1971} } @article{peltier2009magma, title={Magma transport and storage at Piton de La Fournaise (La R{\'e}union) between 1972 and 2007: A review of geophysical and geochemical data}, author={Peltier, Aline and Bach{\`e}lery, Patrick and Staudacher, Thomas}, journal={Journal of Volcanology and Geothermal Research}, volume={184}, number={1-2}, pages={93--108}, year={2009}, publisher={Elsevier} } @article{petit1999climate, title={Climate and atmospheric history of the past 420,000 years from the Vostok ice core, Antarctica}, author={Petit, Jean-Robert and Jouzel, Jean and Raynaud, Dominique and Barkov, Narcisse I and Barnola, J-M and Basile, Isabelle and Bender, Michael and Chappellaz, J and Davis, M and Delaygue, G and others}, journal={Nature}, volume={399}, number={6735}, pages={429}, year={1999}, publisher={Nature Publishing Group} } @book{Peycru2009, year = {2009}, title = {Géologie : Tout en un -- 1\up{er} et 2\up{e} années BCPST}, editor = {Dunod} } %%%%%%%%%%%%%%%%% Pf %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Pg %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ph %%%%%%%%%%%%%%%%%%%%%%%%% @article{Phinney2003, author = {Phinney, Amie L and Drisaldi, Bettina and Schmidt, Stephen D and Lugowski, Stan and Coronado, Veronica and Liang, Yan and Horne, Patrick and Yang, Jing and Sekoulidis, Joannis and Coomaraswamy, Janaky and Chishti, M Azhar and Cox, Diane W and Mathews, Paul M and Nixon, Ralph A and Carlson, George A and George-hyslop, Peter St and Westaway, David}, journal = {Proceedings of the National Academy of Sciences}, mendeley-groups = {Th\`{e}se/Diseases/Alzheimer}, number = {24}, pages = {14193--14198}, title = {{\texit{In vivo} reduction of amyloid-$\beta$ by a mutant copper transporter}}, volume = {100}, doi = {10.1073/pnas.2332851100}, year = {2003} } %%%%%%%%%%%%%%%%% Pi %%%%%%%%%%%%%%%%%%%%%%%%% @article{pinkerton1978field, title={Field measurements of the rheology of lava}, author={Pinkerton, Harry and Sparks, RSJ}, journal={Nature}, volume={276}, number={5686}, pages={383}, year={1978}, publisher={Nature Publishing Group} } %%%%%%%%%%%%%%%%% Pj %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Pk %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Pl %%%%%%%%%%%%%%%%%%%%%%%%% @misc{Planeterre2019, author = {Planet-terre}, year = {\the \year}, url = {https://planet-terre.ens-lyon.fr/}} %%%%%%%%%%%%%%%%% Pm %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Pn %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Po %%%%%%%%%%%%%%%%%%%%%%%%% @book{Pomerol2011, title={El{\'e}ments de g{\'e}ologie 14{\`e}me {\'e}dition}, author={Pomerol, Charles and Lagabrielle, Yves and Renard, Maurice and Guillot, St{\'e}phane}, year={2011}, publisher={Dunod} } %%%%%%%%%%%%%%%%% Pou %%%%%%%%%%%%%%%%%%%%%%%%% @article{PourLaScience2000a, author = {Article-PLS}, journal = {Pour la Science}, pages = {48-54}, title = {{L'alchimie des étoiles}}, number = {45}, year = {2000} } @article{PourLaScience2004, author = {Article-PLS}, journal = {Pour la Science}, pages = {20-25}, title = {{La naissance des galaxies}}, number = {45}, year = {2004} } @article{PourLaScience2010TerreOuvert, author = {Dossier-PLS}, journal = {Pour la Science}, pages = {1-124}, title = {{La Terre à coeur ouvert -- Du noyau aux volcans}}, number = {67}, year = {2010} } @article{PourLaScience2011a, author = {Article-PLS}, journal = {Pour la Science}, pages = {24-31}, title = {{Le c\^{o}té obscur de la voie lactée}}, number = {410}, year = {2011} } @article{PourLaScience2015Antarctique, author = {Orsi, Anaïs}, journal = {Pour la Science}, pages = {42-51}, title = {{Mille ans de variations climatiques en Antarctique}}, number = {458}, year = {2015} } @article{PourLaScience2015Climat, title = {Climat Relever le défi du réchauffement}, year = {2015}, journal = {Pour la Science}, number = {85}, author = {Dossier-PLS} } @article{PourLaScience2017a, author = {Dossier-PLS}, journal = {Pour la Science}, pages = {20-25}, title = {{Et si le Big Bang n'avait jamais existé}}, number = {45}, year = {2017} } @article{PourLaScience2019, author = {Article-PLS}, journal = {Pour la Science}, pages = {40-49}, title = {{La première carte 3D de la voie lactée}}, number = {503}, year = {2019} } %%% Datation @article{PourLaScience2004datations, author = {Dossier-PLS}, journal = {Pour la Science}, title = {{Le temps des datations}}, number = {42}, year = {2004} } @article{PourLaScience2016datations, author = {Article-PLS}, journal = {Pour la Science}, title = {{Néanderthal a-t-il inventé la culture?}}, number = {465}, year = {2016}, month = {Juil} } @article{poissy2020pulmonary, title={Pulmonary embolism in COVID-19 patients: awareness of an increased prevalence}, author={Poissy, Julien and Goutay, Julien and Caplan, Morgan and Parmentier, Erika and Duburcq, Thibault and Lassalle, Fanny and Jeanpierre, Emmanuelle and Rauch, Antoine and Labreuche, Julien and Susen, Sophie}, journal={Circulation}, year={2020}, publisher={Am Heart Assoc} } %%%%%%%%%%%%%%%%% Pp %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Pq %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Pr %%%%%%%%%%%%%%%%%%%%%%%%% @article{pratt1855attraction, title={I. On the attraction of the Himalaya Mountains, and of the elevated regions beyond them, upon the plumb-line in India}, author={Pratt, John Henry}, journal={Philosophical Transactions of the Royal Society of London}, number={145}, pages={53--100}, year={1855}, publisher={The Royal Society London} } @conference{prognon2013regolithe, author = {Prognon, Caroline and Leynet, Aurélien and Cruz-Mermy, Davy and Roullé, Agathe and De Martin, Florent and D. Monfort, Climent and Tissoux, Hélène and Lacquement, Frédéric and Prognon, Francois and Wyns, Robert and Quesnel, Florence and Nehlig, Pierre}, title = {Le Régolithe des Vosges et du Fossé rhénan }, booktitle = {DÉMONSTRATEUR RGF}, editor = {BRGM Editions}, year = {2013}, } @article{prufer2017high, title={A high-coverage Neandertal genome from Vindija Cave in Croatia}, author={Pr{\"u}fer, Kay and de Filippo, Cesare and Grote, Steffi and Mafessoni, Fabrizio and Korlevi{\'c}, Petra and Hajdinjak, Mateja and Vernot, Benjamin and Skov, Laurits and Hsieh, Pinghsun and Peyr{\'e}gne, St{\'e}phane and others}, journal={Science}, volume={358}, number={6363}, pages={655--658}, year={2017}, publisher={American Association for the Advancement of Science} } %%%%%%%%%%%%%%%%% Ps %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Pt %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Pu %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Pv %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Pw %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Px %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Py %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Pz %%%%%%%%%%%%%%%%%%%%%%%%% @article{Puig2002, abstract = {In the past few years, exciting advances have been made toward understanding how copper is transported into and distributed to cupro-proteins within cells. Recent work has identified high-affinity copper transporters at the plasma membrane in a number of organisms. The elucidation of the three-dimensional structure of copper chaperones and target cupro-proteins has shown that highly specific interactions between homologous domains foster copper transfer between conserved copper ligands, and facilitate a detailed understanding of vectorial copper-transfer reactions. Furthermore, the recent generation of mouse-knockout models, deficient in a high-affinity copper transporter, or in copper chaperones, has demonstrated the importance of copper uptake and targeted distribution in both predicted and fascinating unanticipated ways in growth and development.}, author = {Puig, Sergi and Thiele, Dennis J}, journal = {Current opinion in chemical biology}, keywords = {Animals,Antiporters,Antiporters: metabolism,Biological Transport,Cation Transport Proteins,Copper,Copper: pharmacokinetics,Humans,Membrane Proteins,Membrane Proteins: metabolism,Metalloproteins,Metalloproteins: metabolism,Saccharomyces cerevisiae Proteins,Yeasts}, mendeley-groups = {Th\`{e}se/Presentation Isotopisher salon,Th\`{e}se,Th\`{e}se/Cu transport in cell,Th\`{e}se/Cu transport in cell/S. cerevisiae/Molecular approach}, number = {2}, pages = {171--180}, title = {{Molecular mechanisms of copper uptake and distribution.}}, volume = {6}, year = {2002} } @article{Pushie2015, author = {Pushie, M. Jake and Shaw, Katharine and Franz, Katherine J. and Shearer, Jason and Haas, Kathryn L.}, doi = {10.1021/acs.inorgchem.5b01162}, journal = {Inorganic Chemistry}, mendeley-groups = {Th\`{e}se/Cu transport in cell/Human/CTR1}, number = {17}, pages = {8544--8551}, title = {{Model Peptide Studies Reveal a Mixed Histidine-Methionine Cu(I) Binding Site at the N-Terminus of Human Copper Transporter 1}}, volume = {54}, year = {2015} } %%%%%%%%%%%%%%%%% Q %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Qu %%%%%%%%%%%%%%%%%%%%%%%%% @book{Quesne2004, author = {Quesne, Didier and Kersuzan, Annabelle}, year = {2004}, title = {Géologie de la France}, editor = {Omnisciences}, } %%%%%%%%%%%%%%%%% R %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ra %%%%%%%%%%%%%%%%%%%%%%%%% @article{Raymond2004, title={Making other earths: dynamical simulations of terrestrial planet formation and water delivery}, author={Raymond, Sean N and Quinn, Thomas and Lunine, Jonathan I}, journal={Icarus}, volume={168}, number={1}, pages={1--17}, year={2004}, publisher={Elsevier} } %%%%%%%%%%%%%%%%% Rb %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Rc %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Rd %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Re %%%%%%%%%%%%%%%%%%%%%%%%% @book{reading1978sedimentary, title={Sedimentary environments and facies}, author={Reading, Harold G and Reading, Harold G}, volume={60}, year={1978}, publisher={Blackwell Oxford} } %%%%%%%%%%%%%%%%% Rf %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Rg %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Rh %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ri %%%%%%%%%%%%%%%%%%%%%%%%% @article{richmond2008orrorin, title={Orrorin tugenensis femoral morphology and the evolution of hominin bipedalism}, author={Richmond, Brian G and Jungers, William L}, journal={Science}, volume={319}, number={5870}, pages={1662--1665}, year={2008}, publisher={American Association for the Advancement of Science} } %%%%%%%%%%%%%%%%% Rj %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Rk %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Rl %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Rm %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Rn %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ro %%%%%%%%%%%%%%%%%%%%%%%%% @book{robert2012geosciences, title={G{\'E}OSCIENCES La dynamique du syst{\`e}me Terre}, author={Robert, Christian and Bousquet, Romain}, year={2012}, publisher={Belin} } @book{rouchy2006evaporites, title={Les {\'e}vaporites: mat{\'e}riaux singuliers, milieux extr{\`e}mes.}, author={Rouchy, J-M and Blanc-Valleron, M-M}, year={2006} } %%%%%%%%%%%%%%%%% Rp %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Rq %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Rr %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Rs %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Rt %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ru %%%%%%%%%%%%%%%%%%%%%%%%% @book{ruddiman2001, title={Earth's Climate: past and future}, author={Ruddiman, William F}, year={2001}, edition = {second}, publisher={Macmillan} } %%%%%%%%%%%%%%%%% Rv %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Rw %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Rx %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ry %%%%%%%%%%%%%%%%%%%%%%%%% @article{Ryan2013, author = {Ryan, Brooke M and Kirby, Jason K and Degryse, Fien and Harris, Hugh and Mclaughlin, Mike J and Scheiderich, Kathleen}, journal = {New Phytologist}, volume = {199}, pages = {367--378}, title = {{Copper speciation and isotopic fractionation in plants: uptake and translocation mechanisms}}, year = {2013}, doi ={10.1111/nph.12276} } %%%%%%%%%%%%%%%%% Rz %%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% S %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Sa %%%%%%%%%%%%%%%%%%%%%%%% @article{Sager2013, title={An immense shield volcano within the Shatsky Rise oceanic plateau, northwest Pacific Ocean}, author={Sager, William W and Zhang, Jinchang and Korenaga, Jun and Sano, Takashi and Koppers, Anthony AP and Widdowson, Mike and Mahoney, John J}, journal={Nature Geoscience}, volume={6}, number={11}, pages={976}, year={2013}, publisher={Nature Publishing Group} } @article{savelli2002time, title={Time--space distribution of magmatic activity in the western Mediterranean and peripheral orogens during the past 30 Ma (a stimulus to geodynamic considerations)}, author={Savelli, Carlo}, journal={Journal of Geodynamics}, volume={34}, number={1}, pages={99--126}, year={2002}, publisher={Elsevier} } @phdthesis{savarino2009fractionnements, title={Les fractionnements isotopiques ind{\'e}pendants de la masse: vers un nouveau outil d’analyse en g{\'e}ochimie}, author={Savarino, Joel}, year={2009} } %%%%%%%%%%%%%%%%% Sb %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Sc %%%%%%%%%%%%%%%%%%%%%%%% @article{scerri2018did, title={Did our species evolve in subdivided populations across Africa, and why does it matter?}, author={Scerri, Eleanor ML and Thomas, Mark G and Manica, Andrea and Gunz, Philipp and Stock, Jay T and Stringer, Chris and Grove, Matt and Groucutt, Huw S and Timmermann, Axel and Rightmire, G Philip and others}, journal={Trends in ecology \& evolution}, year={2018}, publisher={Elsevier} } %%%%%%%%%%%%%%%%% Sd %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Se %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Sf %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Sg %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Sh %%%%%%%%%%%%%%%%%%%%%%%% @article{@article{shi2011abundances, title={Abundances of chemical elements in granitoids of different geological ages and their characteristics in China}, author={Shi, Changyi and Yan, Mingcai and Chi, Qinghua}, journal={Geoscience Frontiers}, volume={2}, number={2}, pages={261--275}, year={2011}, publisher={Elsevier} }, title={Abundances of chemical elements in granitoids of different geological ages and their characteristics in China}, author={Shi, Changyi and Yan, Mingcai and Chi, Qinghua}, journal={Geoscience Frontiers}, volume={2}, number={2}, pages={261--275}, year={2011}, publisher={Elsevier} } @conference{Shives2017, author = {Shives, R.}, year = {2017}, booktitle = {Gamma Ray Spectrometry: Mineral Exploration, Environment, Health and Safety}, organization = {Minerals North Conference}, title = {Gamma Ray Spectrometry:Exploration, Environment, Health and Safety} } %%%%%%%%%%%%%%%%% Si %%%%%%%%%%%%%%%%%%%%%%%% @article{sibuet2004pyrenean, title={Pyrenean orogeny and plate kinematics}, author={Sibuet, Jean-Claude and Srivastava, Shiri P and Spakman, Wim}, journal={Journal of Geophysical Research: Solid Earth}, volume={109}, number={B8}, year={2004}, publisher={Wiley Online Library} } @book{sigurdsson2015encyclopedia, title={The encyclopedia of volcanoes}, author={Sigurdsson, Haraldur and Houghton, Bruce and McNutt, Steve and Rymer, Hazel and Stix, John}, year={2015}, publisher={Elsevier} } %%%%%%%%%%%%%%%%% Sj %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Sk %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Sl %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Sm %%%%%%%%%%%%%%%%%%%%%%%% @article{Smith2006, author = {Smith, Michael G. and Snyder, Michael}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/method-bio/Yeast-human-diseases/smith2006.pdf:pdf}, journal = {Current Protocols in Human Genetics}, mendeley-groups = {Th\`{e}se/Protocole/Yeast+disease/Yeast+human model}, pages = {1--8}, volume = {48}, title = {{Yeast as a Model for Human Disease}}, year = {2006}, doi = {10.1002/0471142905.hg1506s48} } %%%%%%%%%%%%%%%%% Sn %%%%%%%%%%%%%%%%%%%%%%%% @article{Snyder1998, author = {Snyder, Ronald D and Friedman, Mitchell B}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Diseases/Parkinson/Snyder1998.pdf:pdf}, journal = {Mutation Research}, keywords = {clastogenesis,copper,dopamine,l -dopa,manganese,micronucleus,parkinson,s,v79}, mendeley-groups = {Th\`{e}se/Diseases/Parkinson}, pages = {1--8}, title = {{Enhancement of cytotoxicity and clastogenicity of L-DOPA and dopamine by manganese and copper}}, volume = {405}, doi = {10.1016/s0027-5107(98)00117-1}, year = {1998} } %%%%%%%%%%%%%%%%% So %%%%%%%%%%%%%%%%%%%%%%%% @book{Solomon2007, title={Climate change 2007-the physical science basis: Working group I contribution to the fourth assessment report of the IPCC}, author={Solomon, Susan and Qin, Dahe and Manning, Martin and Averyt, Kristen and Marquis, Melinda}, volume={4}, year={2007}, publisher={Cambridge university press} } @book{sorel2018atlas, title={Atlas d'initiation aux cartes et coupes g{\'e}ologiques-4e {\'e}d}, author={Sorel, Denis and Vergely, Pierre}, year={2018}, publisher={Dunod}, editor = {BRGM} } %%%%%%%%%%%%%%%%% Sp %%%%%%%%%%%%%%%%%%%%%%%% @article{Spencer1994, author = {Spencer, Jeremy P.E. and Jenner, Andrew and Aruoma, Okezie I. and Evans, Patricia J. and Kaur, Harparkash and Dexter, David T. and Jenner, Peter and {J. Lees}, Andrew and Marsden, David C. and Halliwell, Barry}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Diseases/Parkinson/Spencer1994.pdf:pdf}, journal = {FEBS Letters}, keywords = {copper,d n a damage,hydroxyl radical,l-dopa,parkinson,s disease}, mendeley-groups = {Th\`{e}se/Diseases/Parkinson}, pages = {246--250}, title = {{Intense oxidative DNA damage promoted by L-DOPA and its metabolites Implications for neurodegenerative disease}}, volume = {353}, doi = {10.1016/0014-5793(94)01056-0}, year = {1994} } %%%%%%%%%%%%%%%%% Sq %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Sr %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ss %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% St %%%%%%%%%%%%%%%%%%%%%%%% @article{Staudacher2009, title={The April 2007 eruption and the Dolomieu crater collapse, two major events at Piton de la Fournaise (La R{\'e}union Island, Indian Ocean)}, author={Staudacher, Thomas and Ferrazzini, Val{\'e}rie and Peltier, Aline and Kowalski, Philippe and Boissier, Patrice and Catherine, Philippe and Lauret, Fr{\'e}deric and Massin, Fr{\'e}derick}, journal={Journal of Volcanology and Geothermal Research}, volume={184}, number={1-2}, pages={126--137}, year={2009}, publisher={Elsevier} } @misc{stocker2013climate, title={Climate change 2013: The physical science basis (IPCC report)}, author={Stocker, Thomas F and Qin, Dahe and Plattner, Gian-Kasper and Tignor, Melinda and Allen, Simon K and Boschung, Judith and Nauels, Alexander and Xia, Yu and Bex, Vincent and Midgley, Pauline M and others}, year={2013}, publisher={Cambridge University Press Cambridge} } %%%%%%%%%%%%%%%%% Sv %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Sw %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Sx %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Sy %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Sz %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% T %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ta %%%%%%%%%%%%%%%%%%%%%%%% @phdthesis{tacail2017physiologie, title={Physiologie isotopique du Calcium chez les mammif{\`e}res}, author={Tacail, Théo}, year={2017} } @article{takeuchi2011preeruptive, title={Preeruptive magma viscosity: An important measure of magma eruptibility}, author={Takeuchi, Shingo}, journal={Journal of Geophysical Research: Solid Earth}, volume={116}, number={B10}, year={2011}, publisher={Wiley Online Library} } %%%%%%%%%%%%%%%%% Tb %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Tc %%%%%%%%%%%%%%%%%%%%%%%% @article{Tcherkez2003, author = {Tcherkez, Guillaume and Nogue, Salvador and Bleton, Jean and Cornic, Gabriel and Badeck, Franz and Ghashghaie, Jaleh}, doi = {10.1104/pp.013078.in}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Isotopes/Isotopes in biology/Carbon-isotopes/Tcherkez2003.pdf:pdf}, journal = {Plant Physiology}, mendeley-groups = {Th\`{e}se/Isotopes in biology/Carbon+D\_isotopes}, pages = {237--244}, title = {{Metabolic Origin of Carbon Isotope Composition of Leaf Dark-Respired $CO_{2}$ in French Bean}}, volume = {131}, year = {2003} } %%%%%%%%%%%%%%%%% Td %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Te %%%%%%%%%%%%%%%%%%%%%%%% @misc{TectoGlob2019, author = {Cosentino, P.}, url = {https://www.pedagogie.ac-nice.fr/svt/productions/tectoglob3d/}, title = {Tectoglob3d}, year = {\the\year} } %%%%%%%%%%%%%%%%% Tf %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Tg %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Th %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ti %%%%%%%%%%%%%%%%%%%%%%%% @article{tian2010tarim, title={The Tarim picrite--basalt--rhyolite suite, a Permian flood basalt from northwest China with contrasting rhyolites produced by fractional crystallization and anatexis}, author={Tian, Wei and Campbell, Ian H and Allen, Charlotte M and Guan, Ping and Pan, Wenqing and Chen, Mimi and Yu, Hongjiao and Zhu, Wenping}, journal={Contributions to Mineralogy and Petrology}, volume={160}, number={3}, pages={407--425}, year={2010}, publisher={Springer} } %%%%%%%%%%%%%%%%% Tj %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Tk %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Tl %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Tm %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Tn %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% To %%%%%%%%%%%%%%%%%%%%%%%% @article{Tottey2005, author = {Tottey, Stephen and Harvie, Duncan R and Robinson, Nigel J}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Cu-importance-life/Toxicite/tottey2005.pdf:pdf}, journal = {Account of chemical research}, mendeley-groups = {Th\`{e}se/Cu importance in biology/Toxicity}, number = {10}, pages = {775--783}, title = {{Understanding how cells allocate metals using metal sensors and metallochaperones}}, volume = {38}, year = {2005}, doi = {10.1002/chin.200603271}, } %%%%%%%%%%%%%%%%% Tp %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Tq %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Tr %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ts %%%%%%%%%%%%%%%%%%%%%%%% @article{Tsai2012, abstract = {Copper transporter 1 (CTR1) is the major copper (Cu) influx transporter in mammalian cells. We report here that CTR1 is required for the activation of signaling to the MAPK pathway by the ligands of three major receptor tyrosine kinases (RTK) including FGF, PDGF and EGF. Induction of Erk1/2 phosphorylation was compared in isogenic wild type CTR1+/+ and CTR1-/- cells. Whereas all three ligands increased pErk1/2 in the CTR1+/+ cells, they failed to do this in CTR1-/- cells. While FGF did not enhance the phosphorylation of AKT in the CTR1+/+ cells, both PDGF and EGF increased pAKT in the CTR1+/+ but not CTR1-/- cells. The deficit in Erk1/2 phosphorylation in the CTR1-/- cells was rescued by adding Cu to the medium, and it was induced in CTR1+/+ cells by treatment with a Cu chelator. Intracellular Cu availability was reduced in the CTR1-/- cells as reflected by increased expression of the Cu chaperone CCS. The failure of RTK-induced signaling to both Erk1/2 and AKT suggested the presence of a Cu-dependent step upstream of Ras. The Cu-dependent enzyme SOD1 is responsible for generating the hydrogen peroxide in response to RTK activation that serves to inhibit phosphatases that normally limit RTK signaling. SOD1 activity was reduced by a factor of 17-fold in the CTR1 -/- cells, and addition of hydrogen peroxide restored signaling. We conclude that Cu acquired from CTR1 is required for signaling in pathways regulated by RTKs that play major roles in development and cancer. ?? 2012 Elsevier Inc.}, archivePrefix = {arXiv}, arxivId = {NIHMS150003}, author = {Tsai, Cheng Yu and Finley, J. Cameron and Ali, Sameh S. and Patel, Hemal H. and Howell, Stephen B.}, doi = {10.1016/j.bcp.2012.07.014}, journal = {Biochemical Pharmacology}, keywords = {CTR1,Copper,Receptor tyrosine kinase,SOD1}, mendeley-groups = {Th\`{e}se/Cancer/Cancer and Cu/Cancer and CTR}, number = {8}, pages = {1007--1013}, publisher = {Elsevier Inc.}, title = {{Copper influx transporter 1 is required for FGF, PDGF and EGF-induced MAPK signaling}}, volume = {84}, year = {2012} } %%%%%%%%%%%%%%%%% Tt %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Tu %%%%%%%%%%%%%%%%%%%%%%%% @article{Turnlund1998a, author = {Turnlund, Judith R}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Cu-transport/Metal homeostasis/Cu/Cu in human/homeostasis/Turnlund1998.pdf:pdf}, journal = {American Journal of Clinical Nutrition}, keywords = {absorption,compartmental model,copper,kinetic,model,stable isotopes,tracers,whole-body metabolism}, mendeley-groups = {Th\`{e}se/Cu transport in cell/Human-organs}, pages = {960--964}, title = {{Human whole-body copper metabolism}}, volume = {67}, year = {1998} } @article{Turnlund1998b, author = {Turnlund, Judith R and Keyes, William R and Peiffer, Gary L and Scott, Karen C}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Metal homeostasis/Cu/Cu in human/organs/Turnland1998.pdf:pdf}, journal = {American Journal of Clinical Nutrition}, keywords = {65 cu,copper,copper absorption,copper excretion,men,retention}, mendeley-groups = {Th\`{e}se/Cu transport in cell/Human/Organs}, pages = {1219--1225}, title = {{Copper absorption, excretion, and retention by young men consuming low dietary copper determined by using the stable isotope \textsuperscript{65}Cu.}}, volume = {67}, year = {1998} } @article{Turski2009, author = {Turski, Michelle L and Thiele, Dennis J}, doi = {10.1074/jbc.R800055200}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Cancer/Cancer and cu/Role-Cu-cancer/Turski2009.pdf:pdf}, journal = {The Journal of biological chemistry}, mendeley-groups = {Th\`{e}se/Cancer/Cancer and Cu/Role of Cu in cancer dvt}, number = {2}, pages = {717--721}, title = {{New Roles for Copper Metabolism in Cell Proliferation, Signaling, and Disease}}, volume = {284}, year = {2009} } %%%%%%%%%%%%%%%%% Tv %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Tw %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Tx %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ty %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Tz %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% U %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ua %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ub %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Uc %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ud %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ue %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Uf %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ug %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Uh %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ui %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Uj %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Uk %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ul %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Um %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Un %%%%%%%%%%%%%%%%%%%%%%%% @article{ungar2011diets, title={The diets of early hominins}, author={Ungar, Peter S and Sponheimer, Matt}, journal={Science}, volume={334}, number={6053}, pages={190--193}, year={2011}, publisher={American Association for the Advancement of Science} } @misc{Universalis2019, title = {Encyclopédie Universalis}, author = {Universalis, Encyclopédie}, year = {2019}, url = {https://www.universalis.fr/} } %%%%%%%%%%%%%%%%% Uo %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Up %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Uq %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ur %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Us %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ut %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Uu %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Uv %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Uw %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ux %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Uy %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Uz %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% V %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Va %%%%%%%%%%%%%%%%%%%%%%%% @article{van2015paleolatitude, title={A paleolatitude calculator for paleoclimate studies}, author={van Hinsbergen, Douwe JJ and de Groot, Lennart V and van Schaik, Sebastiaan J and Spakman, Wim and Bijl, Peter K and Sluijs, Appy and Langereis, Cor G and Brinkhuis, Henk}, journal={PloS one}, volume={10}, number={6}, year={2015}, publisher={Public Library of Science} } @article{Vassa2020, year = {2020}, journal = {Frontiers in physics}, title = {The quantitative comparison between the neuronal network and the cosmic web}, authors = {Vazza, Franco and Feletti, Alberto} } %%%%%%%%%%%%%%%%% Vb %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vc %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vd %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ve %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vf %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vg %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vh %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vi %%%%%%%%%%%%%%%%%%%%%%%% @article{vine1966spreading, title={Spreading of the ocean floor: new evidence}, author={Vine, Fred J}, journal={Science}, volume={154}, number={3755}, pages={1405--1415}, year={1966}, publisher={American Association for the Advancement of Science} } %%% Article historique de tectonique des plaques %%%%%%%%%%%%%%%%% Vj %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vk %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vl %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vm %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vn %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vo %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vp %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vq %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vr %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vs %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vt %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vu %%%%%%%%%%%%%%%%%%%%%%%% @article{Vulpe1995, author = {Vulpe, Christopher D and Packman, Seymour.}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Cu-importance-life/Cu-transport/vulpe1995.pdf:pdf}, journal = {Annual Review of nutrition}, keywords = {atpase,ceruloplasmin,menkes disease,metallothionein,wilson disease}, mendeley-groups = {Th\`{e}se/Cu importance in biology/Cu transport}, pages = {293--322}, title = {{Cellular copper transport}}, volume = {15}, doi = {10.1146/annurev.nu.15.070195.001453}, year = {1995} } @article{Vulpe1993, author = {Vulpe, C. and Levinson, B. and Whitney, S. and Packman, S. and Gitschier, J}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Menkes-disease/Vulpe1993.pdf:pdf}, journal = {Nature genetics}, mendeley-groups = {Th\`{e}se/Menkes}, pages = {7--13}, title = {{Isolation of a candidate gene for Menkes disease and evidence that it encodes a copper–transporting ATPase}}, volume = {3}, doi = {10.1038/ng0193-7}, year = {1993} } %%%%%%%%%%%%%%%%% Vv %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vw %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vx %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vy %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Vz %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% W %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Wa %%%%%%%%%%%%%%%%%%%%%%%% @article{walcott1970flexural, title={Flexural rigidity, thickness, and viscosity of the lithosphere}, author={Walcott, RI}, journal={Journal of Geophysical Research}, volume={75}, number={20}, pages={3941--3954}, year={1970}, publisher={Wiley Online Library} } @article{wang2006analysis, title={An analysis of 2004 Sumatra earthquake fault plane mechanisms and Indian Ocean tsunami}, author={Wang, Xiaoming and Liu, Philip L-F}, journal={Journal of Hydraulic Research}, volume={44}, number={2}, pages={147--154}, year={2006}, publisher={Taylor \& Francis Group} } %%%%%%%%%%%%%%%%% Wb %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Wc %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Wd %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% We %%%%%%%%%%%%%%%%%%%%%%%% @book{wegener2012entstehung, title={Die entstehung der kontinente und ozeane}, author={Wegener, Alfred}, year={1915}, publisher={Friedrich Vieweg und Sohn} } @article{Weiss1985, title={Copper transport in rats involving a new plasma protein}, author={Weiss, Kathryn C and Linder, Maria C}, journal={American Journal of Physiology-Endocrinology And Metabolism}, volume={249}, number={1}, pages={E77--E88}, year={1985}, publisher={American Physiological Society} } @article{Weiss2008, author = {Weiss, Dominik J. and Rehk\"{a}mper, Mark and Schoenberg, Ronny and McLaughlin, Mike and Kirby, Jason and Campbell, Peter G C and Arnold, Tim and Chapman, John and Peel, Kate and Gioia, Simone}, doi = {10.1021/es0870855}, journal = {Environmental Science and Technology}, mendeley-groups = {Th\`{e}se/Isotopes in human}, number = {3}, pages = {655--664}, title = {{Application of nontraditional stable-isotope systems to the study of sources and fate of metals in the environment}}, volume = {42}, year = {2008} } @article{Weinstein2011, author = {Weinstein, Charlotte and Moynier, Fr\'{e}d\'{e}ric and Wang, Kun and Paniello, Randal and Foriel, Julien and Catalano, Jeff and Pichat, Sylvain}, doi = {10.1016/j.chemgeo.2011.05.010}, journal = {Chemical Geology}, keywords = {Copper cycle,Cu,Isotopes,Plants,Soils}, mendeley-groups = {Th\`{e}se/Isotopes in biology/Plants}, number = {3-4}, pages = {266--271}, publisher = {Elsevier B.V.}, title = {{Isotopic fractionation of Cu in plants}}, volume = {286}, year = {2011} } @article{Wenger2002, title={{Cellular adaptation to hypoxia: O\textsubscript{2}-sensing protein hydroxylases, hypoxia-inducible transcription factors, and O\textsubscript{2}-regulated gene expression}}, author={Wenger, Roland H}, journal={The FASEB journal}, volume={16}, number={10}, pages={1151--1162}, year={2002}, doi = {10.1096/fj.01-0944rev}, publisher={FASEB} } @article{Wey2005, title={Vascular endothelial growth factor receptor-1 promotes migration and invasion in pancreatic carcinoma cell lines}, author={Wey, Jane S and Fan, Fan and Gray, Michael J and Bauer, Todd W and McCarty, Marya F and Somcio, Ray and Liu, Wenbiao and Evans, Douglas B and Wu, Yan and Hicklin, Daniel J and others}, journal={Cancer}, volume={104}, number={2}, pages={427--438}, year={2005}, doi = {10.1002/cncr.21145}, publisher={Wiley Online Library} } %%%%%%%%%%%%%%%%% Wf %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Wg %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Wh %%%%%%%%%%%%%%%%%%%%%%%% @article{White1998, author = {White, Anthony R and Zheng, Hui and Galatis, Denise and Maher, Fran and Hesse, Lars and Multhaup, Gerd and Masters, Colin L and Cappai, Roberto}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Diseases/Alzheimer/White1998.pdf:pdf}, journal = {The journal of neuroscience}, keywords = {25,35,a,alzheimer,and aplp,aplp2,app,cortical neurons,could share and compensate,ease,for,knock-out mice,neurotoxicity,particularly,s disease,suggest that the aplps,the similarities between app}, mendeley-groups = {Th\`{e}se/Diseases/Alzheimer}, number = {16}, pages = {6207--6217}, title = {{Survival of Cultured Neurons from Amyloid Precursor Protein Knock-Out Mice against Alzheimer’s Amyloid-$\beta$ Toxicity and Oxidative Stress}}, volume = {18}, year = {1998} } @article{Whiteland2014, abstract = {Prostate adenocarcinoma is the second most frequent cancer worldwide and is one of the leading causes of male cancer-related deaths. However, it varies greatly in its behaviour, from indolent non-progressive disease to metastatic cancers with high associated mortality. The aim of this study was to identify predictive biomarkers for patients with localised prostate tumours most likely to progress to aggressive disease, to facilitate future tailored clinical treatment and identify novel therapeutic targets. The expression of 602 genes was profiled using oligoarrays, across three prostate cancer cell lines: CA-HPV-10, LNCaP and PC3, qualitatively identifying several potential prognostic biomarkers. Of particular interest was six transmembrane epithelial antigen of the prostate (STEAP) 1 and STEAP 2 which was subsequently analysed further in prostate cancer tissue samples following optimisation of an RNA extraction method from laser captured cells isolated from formalin-fixed paraffin-embedded biopsy samples. Quantitative analysis of STEAP1 and 2 gene expression were statistically significantly associated with the metastatic cell lines DU145 and PC3 as compared to the normal prostate epithelial cell line, PNT2. This expression pattern was also mirrored at the protein level in the cells. Furthermore, STEAP2 up-regulation was observed within a small patient cohort and was associated with those that had locally advanced disease. Subsequent mechanistic studies in the PNT2 cell line demonstrated that an over-expression of STEAP2 resulted in these normal prostate cells gaining an ability to migrate and invade, suggesting that STEAP2 expression may be a crucial molecule in driving the invasive ability of prostate cancer cells.}, author = {Whiteland, Helen and Spencer-Harty, Samantha and Morgan, Claire and Kynaston, Howard and Thomas, David Hywel and Bose, Pradeep and Fenn, Neil and Lewis, Paul and Jenkins, Spencer and Doak, Shareen H.}, doi = {10.1007/s10585-014-9679-9}, journal = {Clinical \& Experimental Metastasis}, keywords = {carcinogenesis \'{a} metastasis \'{a},migration \'{a} invasion,prostate cancer \'{a} steap1,\'{a} steap2 \'{a}}, mendeley-groups = {Th\`{e}se/Cancer/reductase}, number = {8}, pages = {909--920}, title = {{A role for STEAP2 in prostate cancer progression}}, volume = {31}, year = {2014} } %%%%%%%%%%%%%%%%% Wi %%%%%%%%%%%%%%%%%%%%%%%% @book{white2013geochemistry, title={Geochemistry}, author={White, William M}, year={2013}, publisher={John Wiley \& Sons} } %%%%%%%%%%%%%%%%% Wj %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Wk %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Wl %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Wm %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Wn %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Wo %%%%%%%%%%%%%%%%%%%%%%%% @article{Wong1999, author = {Wong, E and Giandomenico, C M}, journal = {Chemical reviews}, mendeley-groups = {Th\`{e}se/Cancer,Th\`{e}se/Cancer/Resistance to Pt,Th\`{e}se/Cancer/Resistance to Pt/General approach}, number = {9}, pages = {2451--2466}, title = {{Current status of platinum-based antitumor drugs.}}, volume = {99}, year = {1999}, doi = {10.1021/cr980420v} } %%%%%%%%%%%%%%%%% Wp %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Wq %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Wr %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ws %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Wt %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Wu %%%%%%%%%%%%%%%%%%%%%%%% @article{Wu2009, author = {Wu, Xiaobin and Sinani, Devis and Kim, Heejong and Lee, Jaekwon}, doi = {10.1074/jbc.M807909200}, journal = {The Journal of Biological Chemistry}, number = {7}, pages = {4112--4122}, title = {{Copper transport activity of yeast Ctr1 is down-regulated via its C terminus in response to excess copper}}, volume = {284}, year = {2009} } %%%%%%%%%%%%%%%%% Wv %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ww %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Wx %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Wy %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Wz %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% X %%%%%%%%%%%%%%%%%%%%%%%% @article{Xiao2002, author = {Xiao, Zhiguang and Wedd, Anthony G}, file = {:home/jl/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Xiao, Wedd - 2002 - A C-terminal domain of the membrane copper pump Ctr1 exchanges copper(.pdf:pdf}, journal = {Chemical communications}, mendeley-groups = {Th\`{e}se,Th\`{e}se/Cu transport in cell,Th\`{e}se/Cu transport in cell/S. cerevisiae/Ctr1}, pages = {588--589}, title = {{C-terminal domain of the membrane copper pump Ctr1 exchanges copper(I) with the copper chaperone Atx1}}, year = {2002}, volume = {126}, doi = {10.1039/b111180a} } @article{Xiao2004, author = {Xiao, Zhiguang and Loughlin, Fionna and George, Graham N and Howlett, Geoffrey J and Wedd, Anthony G}, file = {:home/jl/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Xiao et al. - 2004 - C-terminal Domain of the Membrane Copper transporter Ctr1 from Saccharomyces cerivisiae Binds Four Cu(I) Ions as a.pdf:pdf}, journal = {Journal of the American Chemical Society}, mendeley-groups = {Th\`{e}se,Th\`{e}se/Cu transport in cell,Th\`{e}se/Cu transport in cell/S. cerevisiae/Molecular approach,Th\`{e}se/Cu transport in cell/S. cerevisiae/Ctr1}, pages = {3081--3090}, title = {{C-terminal domain of the membrane copper transporter Ctr1 from \textit{Saccharomyces cerivisiae} binds four Cu(I) ions as a cuprous-thiolate polynuclear cluster ; sub-femtomolar Cu(I) affinity of three proteins involved in copper trafficking}}, volume = {126}, doi = {10.1021/ja0390350}, year = {2004} } %%%%%%%%%%%%%%%%% Y %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ya %%%%%%%%%%%%%%%%%%%%%%%% @article{yang2006upper, title={Upper mantle structure beneath the Azores hotspot from finite-frequency seismic tomography}, author={Yang, Ting and Shen, Yang and van der Lee, Suzan and Solomon, Sean C and Hung, Shu-Huei}, journal={Earth and Planetary Science Letters}, volume={250}, number={1-2}, pages={11--26}, year={2006}, publisher={Elsevier} } %%%%%%%%%%%%%%%%% Yb %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yc %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yd %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ye %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yf %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yg %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yh %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yi %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yj %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yk %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yl %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ym %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yn %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yo %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yp %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yq %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yr %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ys %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yt %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yu %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yv %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yw %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yx %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yy %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Yz %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Z %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Za %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zb %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zc %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zd %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ze %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zf %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zg %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zh %%%%%%%%%%%%%%%%%%%%%%%% @article{Zhang2011, abstract = {A new method for protein extraction from yeast Saccharomyces cerevisiae cells is described. This method involves the use of LiAc and NaOH to enhance the permeabil- ity of yeast cell wall prior to protein extraction with SDS-PAGE sample buffer. It was safe and efficient compared to other methods reported so far in the literature. The proteins extracted with this new method retained their immunoreactive properties and are suitable for most applications in molecular biology studies. Copyright © 2011}, author = {Zhang, Tingting and Jie, Lei and Hanjiang, Yang and Kun, Xu and Rui, Wang and Zhiying, Zhang}, doi = {10.1002/yea}, journal = {Yeast}, keywords = {16 june 2011,30 august 2011,accepted,liac,protein extraction,received,saccharomyces cerevisiae,yeast}, mendeley-groups = {Th\`{e}se/R\'{e}sine/Protocole/Prot extraction\_yeast,Th\`{e}se}, number = {10}, pages = {545--551}, title = {{An improved method for whole protein extraction from yeast \textit{Saccharomyces cerevisiae}}}, volume = {26}, year = {2011} } @article{Zhang2012, abstract = {BACKGROUND: Iron and its homeostasis are intimately related to inflammatory responses, but the underlying molecular mechanisms are poorly understood. We investigated the role of Steap3 in regulating iron homeostasis in macrophages, and the effects of Steap3 depletion on host inflammatory responses.$\backslash$n$\backslash$nDESIGN AND METHODS: We analyzed bone marrow-derived macrophages and primary cultured hepatocytes from Steap3(-/-) mouse models to investigate the roles of Steap3 in coordinately regulating iron homeostasis and inflammatory responses. First, we examined iron distribution and iron status in cells deficient in Steap3, as well as the requirement for the Steap3 gene during inflammatory responses. Secondly, we analyzed the regulation of Steap3 expression by inflammatory stimuli and thus, the influence of these stimuli on iron distribution and homeostasis.$\backslash$n$\backslash$nRESULTS: We found that Steap3 mRNA was expressed at high levels in macrophages and hepatocytes. Steap3 deficiency led to impaired iron homeostasis, causing abnormal iron distribution and a decreased availability of cytosolic iron in macrophages. Among STEAP family members, Steap3 mRNA was uniquely down-regulated in macrophages stimulated by lipopolysaccharides. To determine whether Steap3 regulated iron homeostasis during inflammatory stress, we treated Steap3(-/-) mice with lipopolysaccharide, which produced greater iron accumulation in the vital tissues of these mice compared to in the tissues of wild-type controls. Furthermore, Steap3 depletion led to impaired induction of interferon-$\beta$, monocyte chemoattractant protein-5, and interferon induced protein-10 in macrophages via the TLR4-mediated signaling pathway.$\backslash$n$\backslash$nCONCLUSIONS: Steap3 is important in regulating both iron homeostasis and TLR4-mediated inflammatory responses in macrophages. Steap3 deficiency causes abnormal iron status and homeostasis, which leads to impaired TLR4-mediated inflammatory responses in macrophages. Following inflammatory stimuli, Steap3 depletion causes dysregulated iron sequestration and distribution. Our results provide important insights into the function of Steap3 as a coordinate regulator of both iron homeostasis and innate immunity.}, author = {Zhang, Fan and Tao, Yunlong and Zhang, Zhuzhen and Guo, Xin and An, Peng and Shen, Yuanyuan and Wu, Qian and Yu, Yu and Wang, Fudi}, doi = {10.3324/haematol.2012.063974}, journal = {Haematologica}, keywords = {Animals,Blotting, Western,Cell Proliferation,Cell Proliferation: drug effects,Hepatocytes,Hepatocytes: cytology,Hepatocytes: metabolism,Homeostasis,Inflammation,Inflammation: etiology,Inflammation: metabolism,Inflammation: pathology,Iron,Iron: metabolism,Lipopolysaccharides,Lipopolysaccharides: pharmacology,Macrophages,Macrophages: cytology,Macrophages: metabolism,Membrane Proteins,Membrane Proteins: physiology,Mice,Mice, Knockout,RNA, Messenger,RNA, Messenger: genetics,Real-Time Polymerase Chain Reaction,Reverse Transcriptase Polymerase Chain Reaction,Toll-Like Receptor 4,Toll-Like Receptor 4: genetics,Toll-Like Receptor 4: metabolism}, mendeley-groups = {Th\`{e}se/Cancer/reductase/STEAP3}, number = {12}, pages = {1826--1835}, title = {{Metalloreductase Steap3 coordinates the regulation of iron homeostasis and inflammatory responses.}}, volume = {97}, year = {2012} } @article{Zhu2002, author = {Zhu, X. K. and Guo, Y. and Williams, R.J.P. and O'Nions, R. K. and Matthews, A. and Belshaw, N. S. and Canters, G. W. and de Waal, E. C. and Weser, U. and Burgess, B. K. and Salvato, B.}, doi = {10.1016/S0012-821X(02)00615-5}, journal = {Earth and Planetary Science Letters}, number = {1-2}, pages = {47--62}, title = {{Mass fractionation processes of transition metal isotopes}}, volume = {200}, year = {2002} } @article{Zhu2000, author = {Zhu, X. K. and O'Nions, R. K. and Guo, Y. and Belshaw, N. S. and Rickard, D.}, doi = {10.1016/S0009-2541(99)00076-5}, journal = {Chemical Geology}, keywords = {Black smokers,Cu-isotopes,Hydrothermal systems,Isotope fractionation,Plasma-source mass spectrometry,Sulphides}, mendeley-groups = {Th\`{e}se/Isotopes in biology/IC non organic}, pages = {139--149}, title = {{Determination of natural Cu-isotope variation by plasma-source mass spectrometry: Implications for use as geochemical tracers}}, volume = {163}, year = {2000} } @article{Zhou1993, author={Zhou,P and Thiele, D.J.}, journal={BioFactors}, volume={4}, pages={105--115}, year={1993}, title={Copper and gene regulation in yeast} } @article{Zhou1997, author = {Zhou, Bing and Gitschier, Jane}, file = {:home/jl/Documents/Documents\_JL/Lien\_vers\_Experiences/Bibliography/Metal homeostasis/Cu/Cu in Yeast/Ctr1/Zhou1997\_A\_human\_gene\_for\_Cu\_uptake\_complementation\_yeast.pdf:pdf}, journal = {Proceedings of the National Academy of Sciences}, mendeley-groups = {Th\`{e}se/Cancer/Resistance to Pt/Ctr1,Th\`{e}se/Cu transport in cell/S. cerevisiae/Ctr1}, pages = {7481--7486}, title = {{hCtr1: A human gene for copper uptake identified by complementation in yeast}}, volume = {94}, doi = {10.1073/pnas.94.14.7481}, year = {1997} } %%%%%%%%%%%%%%%%% Zi %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zj %%%%%%%%%%%%%%%%%%%%%%%%* %%%%%%%%%%%%%%%%% Zk %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zl %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zm %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zn %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zo %%%%%%%%%%%%%%%%%%%%%%%% @article{Zowczak2001, abstract = {Several studies have shown that plasma copper concentrations are increased in various carcinomas. Zinc acts as a cellular growth protector, including growth of neoplastic cells, and its deficiency was demonstrated to be involved in several stages of malignant transformation. However, the usefulness of the serum zinc and copper determinations in cancer prevention, detection, monitoring treatment, and prognosis requires further investigations. The aim of the present study was to compare the serum copper and zinc levels in patients with cancer of the lung (PC), breast (BC), gastrointestinal tract (GIC), and gynecological (GYNC) malignancy with progress of the disease. The results of the study have shown a significant increase in the mean total serum Cu levels and the serum Cu/Zn ratio in all patient groups with cancer compared to a control group. Increased mean serum concentrations and Cu/Zn ratios were found in the whole group (ALLC), and for the GIC and GYNC groups with local as well as metastasized (Meta) disease in comparison with the control group. The mean serum concentrations of Zn were decreased only in metastasized ALLC and GYNC groups.}, author = {Zowczak, M and Iskra, M and Torlinski, L and Cofta, S}, doi = {10.1385/bter:82:1-3:001}, journal = {Biol Trace Elem Res}, keywords = {Adult,Aged,Aged, 80 and over,Breast Neoplasms/blood,Case-Control Studies,Copper/ blood,Female,Gastrointestinal Neoplasms/blood,Genital Neoplasms, Female/blood,Humans,Lung Neoplasms/blood,Male,Middle Aged,Neoplasm Metastasis/physiopathology,Neoplasms/ blood,Prognosis,Zinc/ blood}, mendeley-groups = {Th\`{e}se/Cancer/Cancer and Cu/Cu level}, number = {1-3}, pages = {1--8}, title = {{Analysis of serum copper and zinc concentrations in cancer patients}}, volume = {82}, year = {2001} } %%%%%%%%%%%%%%%%% Zp %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zq %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zr %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zs %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zt %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zu %%%%%%%%%%%%%%%%%%%%%%%% @book{zumbuhl1980schwankungen, title={Die Schwankungen der Grindelwaldgletscher in den historischen Bild-und Schriftquellen des 12. bis 19. Jahrhunderts: ein Beitrag zur Gletschergeschichte und Erforschung des Alpenraumes}, author={Zumb{\"u}hl, Heinz J}, year={1980}, publisher={Birkh{\"a}user} } %%%%%%%%%%%%%%%%% Zv %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zw %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zx %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zy %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zz %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%% WEB SITE %%%%%%%%%%%%%%%% @misc{Horizon2018, title = {Horizon-simulation.org}, author = {}, url = {https://www.horizon-simulation.org/} year = {2018}, } %%%%%%%%%%%%%%%%% Za %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zb %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zc %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zd %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Ze %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zf %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zg %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zh %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zi %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zj %%%%%%%%%%%%%%%%%%%%%%%%* %%%%%%%%%%%%%%%%% Zk %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zl %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zm %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zn %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zo %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zp %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zq %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zr %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zs %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zt %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zu %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zv %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zw %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zx %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zy %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Zz %%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%% Notice carte géologique FRANCE %%%%%%%%%%%%%%%%%%%%%%%% @misc{Toulon1969, year = {1969}, author = {Gouvernet, Claude and Blanc, Jean-Joseph and Rouire Jacques}, editor = {BRGM}, title = {Notice et carte géologique de Toulon au 1/50 000\up{ème}} }